the pangenome graph builder
☆504Mar 31, 2026Updated 3 months ago
Alternatives and similar repositories for pggb
Users that are interested in pggb are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆246May 1, 2026Updated 2 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆217Jun 21, 2026Updated 2 weeks ago
- Official home of genome aligner based upon notion of Cactus graphs☆693Updated this week
- Constructing a pangenome gene graph☆209Aug 11, 2025Updated 10 months ago
- Sequence-to-graph mapper and graph generator☆482Aug 11, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆252Dec 16, 2025Updated 6 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆46Oct 13, 2024Updated last year
- implicit pangenome graph☆109Jun 17, 2026Updated 2 weeks ago
- alignment to variation graph inducer☆161Jun 17, 2026Updated 2 weeks ago
- linearize and simplify variation graphs using blocked partial order alignment☆63Mar 31, 2026Updated 3 months ago
- ☆289Dec 29, 2025Updated 6 months ago
- tools for working with genome variation graphs☆1,324Updated this week
- Synteny and Rearrangement Identifier☆474Updated this week
- Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.☆108Apr 30, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A genome completeness evaluation tool based on miniprot☆250Jun 20, 2026Updated 2 weeks ago
- A list of software for pangenomics☆193Updated this week
- Tools for fast and flexible genome assembly scaffolding and improvement☆567Feb 14, 2024Updated 2 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆401Apr 22, 2026Updated 2 months ago
- ☆101Apr 22, 2024Updated 2 years ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆135Updated this week
- Tool to plot synteny and structural rearrangements between genomes☆348Apr 7, 2025Updated last year
- Pangenome-based genome inference☆174Jun 15, 2026Updated 3 weeks ago
- Jasmine: SV Merging Across Samples☆254Dec 20, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- GFA visualizer, GPU-accelerated using Vulkan☆77Aug 2, 2022Updated 3 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆788May 31, 2026Updated last month
- k-mer based assembly evaluation☆346May 21, 2026Updated last month
- COsine SImilarity-based Genotyper using pangenomes☆36Jun 4, 2026Updated last month
- Align proteins to genomes with splicing and frameshift☆406Jan 5, 2026Updated 6 months ago
- A fast approximate aligner for long DNA sequences☆287Oct 11, 2024Updated last year
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆296May 28, 2026Updated last month
- An accurate GFF3/GTF lift over pipeline☆546Aug 1, 2023Updated 2 years ago
- Structural variant toolkit for VCFs☆418May 22, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- SRF: Satellite Repeat Finder☆105Jan 8, 2024Updated 2 years ago
- A grammar of graphics for comparative genomics☆770Feb 23, 2026Updated 4 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆170Updated this week
- the pangenome graph evaluator☆29Apr 12, 2021Updated 5 years ago
- Whole Genome Alignment Tools☆225Nov 6, 2025Updated 8 months ago
- Bifrost graph gene caller.☆98Jun 18, 2026Updated 2 weeks ago
- Structural variation caller using third generation sequencing☆666Jun 24, 2026Updated 2 weeks ago