Alternatives and similar repositories for pggb:

Users that are interested in pggb are comparing it to the libraries listed below

• schneebergerlab / syri
  Synteny and Rearrangement Identifier
  ☆378Updated this week
• Gaius-Augustus / BRAKER
  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…
  ☆400Updated 3 months ago
• malonge / RagTag
  Tools for fast and flexible genome assembly scaffolding and improvement
  ☆505Updated last year
• HKU-BAL / Clair3
  Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
  ☆276Updated 3 weeks ago
• rrwick / Filtlong
  quality filtering tool for long reads
  ☆329Updated last year
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆346Updated last month
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆303Updated 3 weeks ago
• PacificBiosciences / pbbioconda
  PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
  ☆268Updated 3 months ago
• Dfam-consortium / RepeatMasker
  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
  ☆251Updated last week
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆320Updated 11 months ago
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆277Updated 6 months ago
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆361Updated 3 years ago
• Nextomics / NextDenovo
  Fast and accurate de novo assembler for long reads
  ☆389Updated 11 months ago
• hewm2008 / NGenomeSyn
  Any Way to Show Multi genomic Synteny
  ☆185Updated last week
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆222Updated 3 months ago
• isovic / racon
  Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…
  ☆278Updated 11 months ago
• rrwick / Porechop
  adapter trimmer for Oxford Nanopore reads
  ☆358Updated 11 months ago
• wyp1125 / MCScanX
  MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!
  ☆254Updated 4 months ago
• sortmerna / sortmerna
  SortMeRNA: next-generation sequence filtering and alignment tool
  ☆262Updated 4 months ago
• jtlovell / GENESPACE
  ☆206Updated 3 months ago
• marbl / verkko
  Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…
  ☆334Updated this week
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆241Updated last year
• aidenlab / 3d-dna
  3D de novo assembly (3D DNA) pipeline
  ☆209Updated last year
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆212Updated 3 weeks ago
• nanoporetech / modkit
  A bioinformatics tool for working with modified bases
  ☆185Updated 2 weeks ago
• philres / ngmlr
  NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…
  ☆299Updated last year
• agshumate / Liftoff
  An accurate GFF3/GTF lift over pipeline
  ☆479Updated last year
• wdecoster / nanofilt
  Filtering and trimming of long read sequencing data
  ☆203Updated 2 years ago
• wdecoster / chopper
  ☆185Updated last week
• marbl / Winnowmap
  Long read / genome alignment software
  ☆285Updated 6 months ago