Fast and exact gap-affine partial order alignment
☆71Sep 16, 2026Updated last week
Alternatives and similar repositories for poasta
Users that are interested in poasta are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Enumerating bubbles in pangenome graphs☆16Aug 26, 2026Updated last month
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated 2 years ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆32Jul 27, 2023Updated 3 years ago
- bioinformatics toolkit in rust☆108Aug 16, 2026Updated last month
- implicit pangenome graph☆114Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A plant organellar Graphical Fragment Assembly toolkit☆17Updated this week
- Fast approximate string searching☆169Aug 11, 2026Updated last month
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆148Sep 17, 2026Updated last week
- Minipoa: A minimizer-based method for fast and memory-efficient partial order alignment☆19May 23, 2026Updated 4 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- Wavefront alignment algorithm (WFA) in Golang☆33Aug 21, 2026Updated last month
- WFA-lib: Wavefront alignment algorithm library v2☆228Aug 7, 2026Updated last month
- ☆18Jan 29, 2025Updated last year
- An extensible and performant aligner and read mapper☆105Sep 15, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆224Updated this week
- ☆27Jun 16, 2026Updated 3 months ago
- minimizer-space de Bruijn graphs (mdBG) for whole genome assembly☆184Sep 19, 2024Updated 2 years ago
- Extracting paths from assembly graphs☆26Jun 22, 2026Updated 3 months ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jul 12, 2026Updated 2 months ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆22Aug 19, 2026Updated last month
- String algorithm visualizations☆14Feb 7, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated last year
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆139Sep 8, 2026Updated 2 weeks ago
- A pairwise sequence aligner written in Rust☆153May 22, 2026Updated 4 months ago
- Optimal sequence-to-graph alignment with recombinations☆41Apr 28, 2026Updated 5 months ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆48Aug 28, 2026Updated last month
- ☆21Feb 15, 2025Updated last year
- GBZ file format for pangenome graphs☆46Sep 14, 2026Updated 2 weeks ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated 2 years ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Compacted and colored de Bruijn graph construction and querying☆101Sep 18, 2026Updated last week
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- Mumemto: multi-MUM and MEM finding across pangenomes☆137Sep 21, 2026Updated last week
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆40Dec 30, 2025Updated 8 months ago
- Detecting multi-genome synteny using minimizer graph mapping☆116Updated this week
- CLI tool for querying the Genome Taxonomy Database (GTDB). Batch search, genome cards, taxon lineages, and cross-release taxonomic compar…☆33Sep 18, 2026Updated last week
- alignment to variation graph inducer☆165Jul 29, 2026Updated last month