broadinstitute / poastaLinks
Fast and exact gap-affine partial order alignment
☆56Updated this week
Alternatives and similar repositories for poasta
Users that are interested in poasta are comparing it to the libraries listed below
Sorting:
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 3 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 5 months ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆55Updated 2 weeks ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆27Updated 6 months ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50Updated last year
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆31Updated last month
- Optimal sequence-to-graph alignment with recombinations☆38Updated 3 months ago
- implicit pangenome graph☆79Updated this week
- Differential k-mer analysis☆37Updated last year
- A new high-resolution long-read metagenome assembler for even noisy reads☆104Updated 2 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- Python wrapper for wavefront alignment using WFA2-lib☆37Updated last year
- Iterate over minimizers of a DNA sequence☆31Updated last year
- linearize and simplify variation graphs using blocked partial order alignment☆59Updated 3 months ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆39Updated this week
- Statistics and analysis for variation graphs☆46Updated 11 months ago
- Remove human reads from a sequencing run☆40Updated last week
- ☆45Updated last week
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- convert variation graph alignments to coverage maps over nodes☆26Updated 2 weeks ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- ☆25Updated last week
- Generate random test data for bioinformatics☆26Updated last year
- A FASTA/FASTQ format parser library☆20Updated last year
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆40Updated last year
- Genome size estimation from long read overlaps☆72Updated last week
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Updated last week
- MONI: A Pangenomic Index for Finding MEMs☆37Updated 7 months ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆39Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆46Updated 2 months ago