davidebolo1993 / cosigt
☆18Updated 2 weeks ago
Alternatives and similar repositories for cosigt
Users that are interested in cosigt are comparing it to the libraries listed below
Sorting:
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆18Updated 2 weeks ago
- ☆23Updated 8 months ago
- Very simple and configurable all-in-one dotplot program☆12Updated 2 years ago
- Genome Assembly 102☆14Updated 2 weeks ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 10 months ago
- Efficient indexing and querying of annotations in a pangenome graph☆9Updated 6 months ago
- Genome alignment and synteny plots☆30Updated last year
- A Hi-C scaffolding method☆23Updated 3 years ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 5 months ago
- Domain based annotation of transposable elements☆19Updated last week
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated 7 months ago
- ☆15Updated 4 years ago
- Phasing reads with secondary alignments☆18Updated 5 months ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆12Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Computational Pangenomics☆17Updated 2 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 7 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 2 months ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated last year
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated 11 months ago
- The MafFilter genome alignment processor☆18Updated this week
- ☆21Updated 5 months ago
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- Reference bias measuring toolkit☆18Updated 3 weeks ago
- recompute GFA link overlaps☆25Updated 2 years ago
- SV genotyper for long reads with a variation graph☆12Updated last month
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- Consensus genome annotation using OMA☆24Updated last week