Alternatives and similar repositories for cosigt:

Users that are interested in cosigt are comparing it to the libraries listed below

• Wenfei-Xian / TIPP
  Telomere local assembly, Improved whole genome polish, and Plastid assembly
  ☆16Updated 3 weeks ago
• marbl / training
  Genome Assembly 102
  ☆14Updated last month
• at-cg / RAFT
  ☆22Updated 6 months ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated 8 months ago
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆23Updated 3 months ago
• magspho / hifieval
  a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).
  ☆21Updated last year
• ekg / pafcheck
  PAF (pairwise alignment format) validator based on extended CIGAR strings
  ☆14Updated 5 months ago
• rlorigro / simple-dotplot
  Very simple and configurable all-in-one dotplot program
  ☆12Updated last year
• institut-de-genomique / HAPO-G
  Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.
  ☆25Updated 11 months ago
• esolares / HapSolo
  Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding
  ☆19Updated 6 months ago
• thegenemyers / MERQURY.FK
  FastK based version of Merqury
  ☆22Updated 2 weeks ago
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆28Updated last year
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆26Updated 5 months ago
• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆18Updated 8 months ago
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆22Updated 3 years ago
• marbl / rukki
  Extracting paths from assembly graphs
  ☆22Updated 10 months ago
• T2T-apes / ape_pangenome
  pangenome analyses for complete genomes of great apes (and gibbon)
  ☆17Updated 4 months ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 6 years ago
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆23Updated last month
• HuiyangYu / TGSFilter
  TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming
  ☆21Updated 9 months ago
• ekg / fastix
  Prefix-renaming FASTA records really fast.
  ☆17Updated 8 months ago
• GTPB / CPANG22
  Computational Pangenomics
  ☆17Updated 2 years ago
• kavonrtep / dante
  Domain based annotation of transposable elements
  ☆19Updated last month
• ERGA-consortium / pipelines
  ☆16Updated last week
• WarrenLab / chicken-pangenome-paper
  Scripts used to perform analyses in Rice et al. (2023)
  ☆15Updated last year
• pdishuck / GAVISUNK
  Genome Assembly Validation via Inter-SUNK distances in ONT reads
  ☆11Updated 2 years ago
• yangli557 / AnnoSINE
  SINE annotation tool for plant genomes
  ☆17Updated last year
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆17Updated 3 months ago
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 2 years ago