davidebolo1993 / cosigtLinks
COsine SImilarity-based Genotyper using pangenomes
☆25Updated this week
Alternatives and similar repositories for cosigt
Users that are interested in cosigt are comparing it to the libraries listed below
Sorting:
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Updated 9 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆31Updated 7 months ago
- Phasing reads with secondary alignments☆21Updated last year
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Updated 2 months ago
- A Hi-C scaffolding method☆22Updated 4 years ago
- Improved long-read assembly by preserving contained reads☆30Updated last year
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- Genome Assembly 102☆17Updated 9 months ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆26Updated last year
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated 2 years ago
- FastK based version of Merqury☆30Updated last week
- Scripts used to perform analyses in Rice et al. (2023)☆16Updated 2 years ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆15Updated 2 years ago
- Domain based annotation of transposable elements☆21Updated 3 months ago
- ☆20Updated 3 weeks ago
- SINE annotation tool for plant genomes☆18Updated 2 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated last year
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Updated last year
- ☆28Updated 5 months ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆26Updated 3 months ago
- Consensus genome annotation using OMA☆31Updated last week
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Updated 2 months ago
- SV calling for diploid assemblies☆30Updated last year
- A web-based, interactive pangenome visualization tool☆21Updated 2 years ago
- ☆19Updated last year
- Genome alignment and synteny plots☆33Updated 2 years ago
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆18Updated this week
- convert variation graph alignments to coverage maps over nodes☆26Updated last week