Long read aligner for cyclic and acyclic pangenome graphs
☆41Dec 20, 2023Updated 2 years ago
Alternatives and similar repositories for PanAligner
Users that are interested in PanAligner are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆35May 23, 2025Updated last year
- Optimal sequence-to-graph alignment with recombinations☆41Apr 28, 2026Updated 4 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40Aug 20, 2026Updated last month
- linearize and simplify variation graphs using blocked partial order alignment☆67Aug 21, 2026Updated last month
- A plant organellar Graphical Fragment Assembly toolkit☆17Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Fast and exact gap-affine partial order alignment☆71Updated this week
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 3 years ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 4 months ago
- ☆11Dec 9, 2022Updated 3 years ago
- String algorithm visualizations☆14Feb 7, 2023Updated 3 years ago
- ☆63Sep 15, 2025Updated last year
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- convert variation graph alignments to coverage maps over nodes☆28Jan 21, 2026Updated 8 months ago
- gia: Genomic Interval Arithmetic☆69Aug 21, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated last year
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆139Sep 8, 2026Updated 2 weeks ago
- GBZ file format for pangenome graphs