Long read aligner for cyclic and acyclic pangenome graphs
☆41Dec 20, 2023Updated 2 years ago
Alternatives and similar repositories for PanAligner
Users that are interested in PanAligner are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆35May 23, 2025Updated last year
- Fast and exact gap-affine partial order alignment☆68Apr 25, 2026Updated last month
- Optimal sequence-to-graph alignment with recombinations☆41Apr 28, 2026Updated 3 weeks ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆38May 4, 2026Updated 3 weeks ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- linearize and simplify variation graphs using blocked partial order alignment☆62Mar 31, 2026Updated last month
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 3 years ago
- ☆29Aug 7, 2025Updated 9 months ago
- ☆11Dec 9, 2022Updated 3 years ago
- ☆62Sep 15, 2025Updated 8 months ago
- String algorithm visualizations☆13Feb 7, 2023Updated 3 years ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 4 years ago
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated 4 months ago
- gia: Genomic Interval Arithmetic☆66Aug 21, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated 11 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆130Mar 20, 2026Updated 2 months ago
- GBZ file format for pangenome graphs☆46Apr 18, 2026Updated last month
- GFA visualizer, GPU-accelerated using Vulkan☆77Aug 2, 2022Updated 3 years ago
- ☆19May 10, 2023Updated 3 years ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Feb 16, 2026Updated 3 months ago
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 2 years ago
- Convert HAL to VG☆24Aug 12, 2024Updated last year
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆39Dec 30, 2025Updated 4 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 11 months ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- Detecting multi-genome synteny using minimizer graph mapping☆105Apr 27, 2026Updated 3 weeks ago
- ☆101Apr 22, 2024Updated 2 years ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆131Apr 17, 2026Updated last month
- ☆31Mar 27, 2024Updated 2 years ago
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆19Apr 9, 2026Updated last month
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 4 years ago
- Extracts subgraphs or components from a graph in GFA format☆24Nov 18, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- COsine SImilarity-based Genotyper using pangenomes☆35Updated this week
- Constructing a pangenome gene graph☆206Aug 11, 2025Updated 9 months ago
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated 2 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 9 months ago
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- ☆15Jun 29, 2021Updated 4 years ago
- Whole Genome Alignment Tools☆224Nov 6, 2025Updated 6 months ago