Long read aligner for cyclic and acyclic pangenome graphs
☆40Dec 20, 2023Updated 2 years ago
Alternatives and similar repositories for PanAligner
Users that are interested in PanAligner are comparing it to the libraries listed below
Sorting:
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆34May 23, 2025Updated 9 months ago
- Optimal sequence-to-graph alignment with recombinations☆40Jul 25, 2025Updated 7 months ago
- linearize and simplify variation graphs using blocked partial order alignment☆60Feb 25, 2026Updated last week
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated last month
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37May 29, 2025Updated 9 months ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 5 months ago
- Fast and exact gap-affine partial order alignment☆59Feb 3, 2026Updated last month
- ☆29Aug 7, 2025Updated 6 months ago
- Convert HAL to VG☆23Aug 12, 2024Updated last year
- ☆62Sep 15, 2025Updated 5 months ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Feb 16, 2026Updated 2 weeks ago
- GFA visualizer, GPU-accelerated using Vulkan☆76Aug 2, 2022Updated 3 years ago
- COsine SImilarity-based Genotyper using pangenomes☆31Feb 13, 2026Updated 2 weeks ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 4 years ago
- ☆18May 10, 2023Updated 2 years ago
- GBZ file format for pangenome graphs☆46Feb 18, 2026Updated 2 weeks ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆119Feb 3, 2026Updated last month
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 8 months ago
- ☆11Dec 9, 2022Updated 3 years ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated 8 months ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆128Dec 8, 2025Updated 2 months ago
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 3 years ago
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 2 years ago
- Extracts subgraphs or components from a graph in GFA format☆24Nov 18, 2024Updated last year
- gia: Genomic Interval Arithmetic☆66Aug 21, 2024Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 6 months ago
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 2 years ago
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated last year
- ☆29Mar 27, 2024Updated last year
- Detecting multi-genome synteny using minimizer graph mapping☆103Feb 9, 2026Updated 3 weeks ago
- Statistics and analysis for variation graphs☆49Dec 17, 2024Updated last year
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 6 years ago
- String algorithm visualizations☆13Feb 7, 2023Updated 3 years ago
- ☆101Apr 22, 2024Updated last year
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- Whole Genome Alignment Tools☆216Nov 6, 2025Updated 3 months ago
- Constructing a pangenome gene graph☆204Aug 11, 2025Updated 6 months ago
- alignment to variation graph inducer☆157Updated this week
- Find, circularise and annotate mitogenome from PacBio assemblies☆191May 11, 2025Updated 9 months ago