at-cg / PanAligner
Long read aligner for cyclic and acyclic pangenome graphs
☆36Updated last year
Alternatives and similar repositories for PanAligner:
Users that are interested in PanAligner are comparing it to the libraries listed below
- Programs implementing the trio-binning genome assembly method☆19Updated last year
- recompute GFA link overlaps☆25Updated 2 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated last month
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- ☆14Updated 9 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated 7 months ago
- Extracting paths from assembly graphs☆22Updated 8 months ago
- convert variation graph alignments to coverage maps over nodes☆22Updated last month
- Genome Assembly 102☆13Updated this week
- Tool for decomposition centromeric assemblies and long reads into monomers☆34Updated 2 years ago
- Improved Phased Assembler☆27Updated 2 years ago
- JTK -- a regional diploid genome assembler☆23Updated 2 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 6 months ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Generate interactive dotplot from mummer4 output using plotly☆26Updated 4 years ago
- Differential k-mer analysis☆34Updated 11 months ago
- Wavefront alignment algorithm (WFA) in Golang☆30Updated 2 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 8 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated last month
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆35Updated last week
- ☆32Updated 2 years ago
- Computational Pangenomics☆17Updated 2 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆26Updated 3 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆36Updated 3 months ago
- ☆21Updated 4 months ago
- Prefix-renaming FASTA records really fast.☆16Updated 6 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago