☆102Apr 22, 2024Updated 2 years ago
Alternatives and similar repositories for pgr-tk
Users that are interested in pgr-tk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17Mar 17, 2023Updated 3 years ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40Aug 20, 2026Updated last week
- PGR-TK: Pangenome Research Tool Kit☆23Apr 19, 2026Updated 4 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆138Aug 12, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Assembled Genomes Compressor☆188Jul 22, 2026Updated last month
- GFA visualizer, GPU-accelerated using Vulkan☆80Aug 2, 2022Updated 4 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 10 months ago
- implicit pangenome graph☆110Aug 8, 2026Updated 3 weeks ago
- alignment to variation graph inducer☆165Jul 29, 2026Updated last month
- Pangenome-based genome inference☆179Aug 18, 2026Updated last week
- base-accurate DNA sequence alignments using WFA and mashmap3☆222Updated this week
- Kmer Analysis of Pileups for Genotyping☆41Jul 16, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- use variant nesting information to flter overlapping sites from vg deconstruct output☆37Jun 12, 2025Updated last year
- Genotyping of copy number sensitive allele-specific haplotypes☆29Updated this week
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆250Aug 21, 2026Updated last week
- convert variation graph alignments to coverage maps over nodes☆28Jan 21, 2026Updated 7 months ago
- vcfdist: Accurately benchmarking phased variant calls☆89Updated this week
- ☆290Dec 29, 2025Updated 8 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆58Mar 7, 2025Updated last year
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing