GeneDx / pgr-tkLinks
☆100Updated last year
Alternatives and similar repositories for pgr-tk
Users that are interested in pgr-tk are comparing it to the libraries listed below
Sorting:
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆103Updated 4 years ago
- vcfdist: Accurately benchmarking phased variant calls☆83Updated 3 weeks ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆61Updated 2 weeks ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆78Updated 6 months ago
- Copy number caller for long read data including SNV utilization☆67Updated 6 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆113Updated this week
- A local-haplotagging-based small and structural variant caller☆85Updated this week
- Simple pileup-based variant caller☆92Updated 5 months ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆105Updated last month
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 5 months ago
- Pipeline to convert a haploid assembly into diploid☆103Updated 8 months ago
- alignment to variation graph inducer☆149Updated 3 months ago
- Show pangenome graphs in an easy way☆56Updated 2 months ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated 2 years ago
- SRF: Satellite Repeat Finder☆97Updated last year
- Toolkit for calling structural variants using short or long reads☆109Updated 2 weeks ago
- ☆117Updated last month
- Tools for the analysis of structural variation in genomes☆81Updated last year
- ☆66Updated last month
- Call select base modifications in PacBio HiFi reads☆13Updated 8 months ago
- Set of tools to manipulate and visualize modified base bam files☆57Updated 3 years ago
- Fast and accurate coordinate conversion between assemblies☆116Updated this week
- Data from the Human PanGenomics Project☆60Updated 4 years ago
- H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)☆72Updated 4 years ago
- Phased assembly variant caller☆126Updated 10 months ago
- A list of software for pangenomics☆131Updated 3 weeks ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆125Updated 2 months ago
- ☆79Updated 5 years ago
- ☆117Updated 3 weeks ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆52Updated 2 months ago