codialab / GFAffixLinks
GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
☆36Updated 5 months ago
Alternatives and similar repositories for GFAffix
Users that are interested in GFAffix are comparing it to the libraries listed below
Sorting:
- Statistics and analysis for variation graphs☆46Updated 11 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆40Updated last year
- ☆28Updated last year
- Differential k-mer analysis☆37Updated last year
- convert variation graph alignments to coverage maps over nodes☆26Updated 2 weeks ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 6 months ago
- ☆26Updated 3 months ago
- convert PAF format to CHAIN format☆33Updated 6 months ago
- Extracting paths from assembly graphs☆24Updated last year
- Multiple sequence alignment of long tandem repeats☆22Updated 3 months ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆37Updated 9 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- FastK based version of Merqury☆28Updated last month
- Extracts subgraphs or components from a graph in GFA format☆25Updated last year
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆19Updated this week
- use variant nesting information to flter overlapping sites from vg deconstruct output☆29Updated 5 months ago
- the pangenome graph evaluator☆29Updated 4 years ago
- ☆45Updated this week
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated this week
- implicit pangenome graph☆79Updated this week
- ☆31Updated 6 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- A web-based, interactive pangenome visualization tool☆21Updated 2 years ago
- Python wrapper for wavefront alignment using WFA2-lib☆37Updated 11 months ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- Fast and exact gap-affine partial order alignment☆56Updated this week