marbl / ModDotPlot
☆134Updated last week
Alternatives and similar repositories for ModDotPlot:
Users that are interested in ModDotPlot are comparing it to the libraries listed below
- Find, circularise and annotate mitogenome from PacBio assemblies☆176Updated last week
- A genome completeness evaluation tool based on miniprot☆192Updated this week
- De novo assembly from Oxford Nanopore reads.☆80Updated last week
- Pangenome-based genome inference☆123Updated this week
- Constructing a pangenome gene graph☆183Updated 7 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆121Updated 2 weeks ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆183Updated 9 months ago
- A list of software for pangenomics☆104Updated this week
- High-precision TE Annotator☆103Updated last week
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆120Updated last month
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆85Updated 7 months ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆96Updated last year
- Evaluation and polishing workflows for T2T genome assemblies☆122Updated 4 months ago
- Comparison of multiple long read datasets☆124Updated 3 months ago
- accurate LiftOver tool for new genome assemblies☆122Updated 7 months ago
- Research release basecalling models and configurations☆107Updated 8 months ago
- A fast whole-genome aligner based on de Bruijn graphs☆142Updated last month
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆91Updated last month
- ☆178Updated 3 weeks ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆159Updated last year
- Collection of tools for the analysis of CpG data☆79Updated last month
- Pipeline to convert a haploid assembly into diploid☆99Updated last month
- Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.☆85Updated last month
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆97Updated 2 weeks ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆114Updated last month
- Wally: Visualization of aligned sequencing reads and contigs☆112Updated 2 months ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆138Updated last month
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆98Updated this week
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 3 years ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆97Updated 11 months ago