☆196Feb 10, 2026Updated 5 months ago
Alternatives and similar repositories for ModDotPlot
Users that are interested in ModDotPlot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Make colorful identity heatmaps of genomic sequence☆139May 24, 2024Updated 2 years ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆133Updated this week
- SRF: Satellite Repeat Finder☆105Jan 8, 2024Updated 2 years ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- A genome completeness evaluation tool based on miniprot☆254Jun 20, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Identify and find telomeres, or telomeric repeats in a genome.☆171Nov 24, 2025Updated 7 months ago
- Genome Assembly 102☆18Apr 23, 2025Updated last year
- RepeatIdentifier☆74Mar 19, 2025Updated last year
- bioinformatics toolkit in rust☆107Updated this week
- Whole Genome Alignment Tools☆225Nov 6, 2025Updated 8 months ago
- An ultra-fast and efficient genomic tool for coverage calculation☆173Jun 9, 2026Updated last month
- oxford dot plots☆173Jul 2, 2026Updated 2 weeks ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆135Updated this week
- implicit pangenome graph☆109Jul 8, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆162Apr 13, 2026Updated 3 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆402Apr 22, 2026Updated 2 months ago
- ☆44Dec 29, 2025Updated 6 months ago
- ☆31Mar 27, 2024Updated 2 years ago
- Evaluating genome assemblies☆123Mar 3, 2026Updated 4 months ago
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 7 months ago
- Enumerating bubbles in pangenome graphs☆15Updated this week
- A genome-scale, fast, and precise segmental duplications mapping tool☆36Sep 11, 2024Updated last year
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Sep 17, 2022Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- base-accurate DNA sequence alignments using WFA and mashmap3☆219Jun 21, 2026Updated last month
- Detecting multi-genome synteny using minimizer graph mapping☆109Jun 12, 2026Updated last month
- Pangenome-based genome inference☆175Jun 15, 2026Updated last month
- Tool to plot synteny and structural rearrangements between genomes☆349Apr 7, 2025Updated last year
- Pairwise whole genome aligner☆242Updated this week
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year
- This is the standalone version of the EviAnn pipeline☆175Jun 24, 2026Updated 3 weeks ago
- alignment to variation graph inducer☆163Jun 17, 2026Updated last month
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆257Jul 10, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆289Dec 29, 2025Updated 6 months ago
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 4 months ago
- k-mer based assembly evaluation☆349Jul 6, 2026Updated 2 weeks ago
- Neural network classification of TE☆100Apr 3, 2026Updated 3 months ago
- Extracting paths from assembly graphs☆24Jun 22, 2026Updated 3 weeks ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆58Jul 19, 2025Updated last year
- MethPhaser: methylation-based haplotype phasing of human genomes☆56Mar 5, 2025Updated last year