Alternatives and similar repositories for ModDotPlot:

Users that are interested in ModDotPlot are comparing it to the libraries listed below

• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆181Updated 2 months ago
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆128Updated 2 weeks ago
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆151Updated 3 years ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆110Updated 10 months ago
• aaranyue / quarTeT
  A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification
  ☆130Updated last month
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆187Updated last month
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆161Updated last year
• c-zhou / yahs
  Yet another Hi-C scaffolding tool
  ☆146Updated 6 months ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆99Updated last year
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆209Updated last week
• paoloshasta / shasta
  De novo assembly from Oxford Nanopore reads.
  ☆83Updated this week
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆128Updated this week
• zhangrengang / TEsorter
  TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
  ☆95Updated 2 months ago
• GaetanBenoitDev / metaMDBG
  MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.
  ☆151Updated 5 months ago
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆173Updated 3 years ago
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆185Updated 11 months ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆112Updated 5 months ago
• sheinasim-USDA / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆87Updated 9 months ago
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆112Updated 2 years ago
• asl / BandageNG
  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
  ☆129Updated this week
• wdecoster / chopper
  ☆185Updated last week
• marschall-lab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆102Updated last month
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆81Updated 3 months ago
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆211Updated 4 months ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆81Updated 2 years ago
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆146Updated 2 months ago
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆102Updated last year
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆200Updated last year
• rrwick / Minipolish
  A tool for Racon polishing of miniasm assemblies
  ☆74Updated 4 years ago
• epi2me-labs / wf-transcriptomes
  ☆91Updated 2 weeks ago