☆190Feb 10, 2026Updated 3 months ago
Alternatives and similar repositories for ModDotPlot
Users that are interested in ModDotPlot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Make colorful identity heatmaps of genomic sequence☆134May 24, 2024Updated last year
- SRF: Satellite Repeat Finder☆102Jan 8, 2024Updated 2 years ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- A genome completeness evaluation tool based on miniprot☆242Sep 18, 2025Updated 8 months ago
- Identify and find telomeres, or telomeric repeats in a genome.☆164Nov 24, 2025Updated 5 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- RepeatIdentifier☆73Mar 19, 2025Updated last year
- Genome Assembly 102☆18Apr 23, 2025Updated last year
- Whole Genome Alignment Tools☆224Nov 6, 2025Updated 6 months ago
- bioinformatics toolkit in rust☆107Updated this week
- An ultra-fast and efficient genomic tool for coverage calculation☆171Feb 9, 2026Updated 3 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆130Mar 20, 2026Updated 2 months ago
- oxford dot plots☆171May 13, 2026Updated last week
- ☆160Apr 13, 2026Updated last month
- ☆42Dec 29, 2025Updated 4 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆31Mar 27, 2024Updated 2 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Sep 17, 2022Updated 3 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆391Apr 22, 2026Updated 3 weeks ago
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 5 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆216Mar 20, 2026Updated 2 months ago
- Evaluating genome assemblies☆121Mar 3, 2026Updated 2 months ago
- A genome-scale, fast, and precise segmental duplications mapping tool☆36Sep 11, 2024Updated last year
- Mumemto: multi-MUM and MEM finding across pangenomes☆131Apr 17, 2026Updated last month
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C, Omni-C).☆94May 7, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- This is the standalone version of the EviAnn pipeline☆145Apr 24, 2026Updated 3 weeks ago
- alignment to variation graph inducer☆159Apr 11, 2026Updated last month
- Tool to plot synteny and structural rearrangements between genomes☆346Apr 7, 2025Updated last year
- Detecting multi-genome synteny using minimizer graph mapping☆105Apr 27, 2026Updated 3 weeks ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year
- ☆286Dec 29, 2025Updated 4 months ago
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆251Apr 13, 2026Updated last month
- Pairwise whole genome aligner☆235Apr 25, 2026Updated 3 weeks ago
- Pangenome-based genome inference☆168May 7, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 2 months ago
- k-mer based assembly evaluation☆343Jun 28, 2024Updated last year
- Neural network classification of TE☆99Apr 3, 2026Updated last month
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆57Jul 19, 2025Updated 10 months ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆55Mar 5, 2025Updated last year
- ☆62Sep 15, 2025Updated 8 months ago
- Optimal sequence-to-graph alignment with recombinations☆41Apr 28, 2026Updated 3 weeks ago