Alternatives and similar repositories for ModDotPlot

Users that are interested in ModDotPlot are comparing it to the libraries listed below

• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆183Updated last month
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆129Updated 2 months ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆113Updated last month
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆104Updated last year
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆190Updated 3 weeks ago
• asl / BandageNG
  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
  ☆137Updated 2 weeks ago
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆213Updated last month
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆150Updated 4 months ago
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆173Updated 4 years ago
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆134Updated last month
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆156Updated 3 years ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆119Updated 6 months ago
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆129Updated 10 months ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆117Updated last month
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆185Updated last year
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆226Updated 5 months ago
• codialab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆110Updated last week
• wdecoster / chopper
  ☆198Updated 2 months ago
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆216Updated 6 months ago
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆118Updated 2 years ago
• c-zhou / yahs
  Yet another Hi-C scaffolding tool
  ☆153Updated 7 months ago
• paoloshasta / shasta
  De novo assembly from Oxford Nanopore reads.
  ☆83Updated 3 weeks ago
• MariaNattestad / Assemblytics
  Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…
  ☆141Updated 7 months ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆169Updated last year
• zhangrengang / TEsorter
  TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
  ☆97Updated 4 months ago
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆85Updated 4 months ago
• nadegeguiglielmoni / genome_assembly_tools
  List of genome assembly tools
  ☆68Updated 3 weeks ago
• jtlovell / GENESPACE
  ☆211Updated 5 months ago
• sheinasim-USDA / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆90Updated 11 months ago
• daewoooo / SVbyEye
  ☆116Updated last month