marbl / ModDotPlot

Related projects ⓘ

Alternatives and complementary repositories for ModDotPlot

• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆169Updated 3 months ago
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆114Updated this week
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆174Updated 4 months ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆106Updated this week
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆178Updated last month
• sheinasim / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆81Updated 4 months ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆92Updated 6 months ago
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆97Updated last month
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆105Updated 2 weeks ago
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆92Updated 7 months ago
• paoloshasta / shasta
  De novo assembly from Oxford Nanopore reads.
  ☆74Updated this week
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆103Updated 5 months ago
• vgl-hub / gfastats
  A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…
  ☆92Updated 2 weeks ago
• wdecoster / chopper
  ☆152Updated 2 months ago
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆136Updated 2 years ago
• marbl / meryl
  A genomic k-mer counter (and sequence utility) with nice features.
  ☆117Updated 2 weeks ago
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆111Updated 3 months ago
• bcgsc / straglr
  Tandem repeat expansion detection or genotyping from long-read alignments
  ☆71Updated last month
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆141Updated 2 years ago
• lh3 / yak
  Yet another k-mer analyzer
  ☆115Updated 7 months ago
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆128Updated last week
• zhangrengang / TEsorter
  TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
  ☆90Updated last month
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆108Updated 2 months ago
• rrwick / Minipolish
  A tool for Racon polishing of miniasm assemblies
  ☆73Updated 3 years ago
• aaranyue / quarTeT
  A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification
  ☆101Updated last month
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆93Updated 10 months ago
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆182Updated 6 months ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆98Updated last month
• qjiangzhao / TEtrimmer
  TEtrimmer: a novel tool to automate manual curation of transposable elements
  ☆67Updated last month
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆171Updated 3 years ago