☆196Feb 10, 2026Updated 6 months ago
Alternatives and similar repositories for ModDotPlot
Users that are interested in ModDotPlot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Make colorful identity heatmaps of genomic sequence☆139May 24, 2024Updated 2 years ago
- Identify and find telomeres, or telomeric repeats in a genome.☆173Nov 24, 2025Updated 8 months ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆134Jul 29, 2026Updated last week
- ☆164Apr 13, 2026Updated 3 months ago
- ☆44Dec 29, 2025Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- SRF: Satellite Repeat Finder☆107Jan 8, 2024Updated 2 years ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Pairwise whole genome aligner☆243Jul 29, 2026Updated last week
- A genome completeness evaluation tool based on miniprot☆259Jul 29, 2026Updated last week
- RepeatIdentifier☆74Mar 19, 2025Updated last year
- bioinformatics toolkit in rust☆107Jul 16, 2026Updated 3 weeks ago
- Whole Genome Alignment Tools☆225Nov 6, 2025Updated 9 months ago
- Genome Assembly 102☆19Apr 23, 2025Updated last year
- An ultra-fast and efficient genomic tool for coverage calculation☆175Jun 9, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Detecting multi-genome synteny using minimizer graph mapping☆113Jun 12, 2026Updated last month
- oxford dot plots☆173Jul 2, 2026Updated last month
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆137Updated this week
- implicit pangenome graph☆110Updated this week
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 3 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆408Aug 4, 2026Updated last week
- ☆31Mar 27, 2024Updated 2 years ago
- Evaluating genome assemblies☆125Mar 3, 2026Updated 5 months ago
- An R package to visualize chromosome scale repeat patterns and predict centromere locations.☆49May 8, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 8 months ago
- Enumerating bubbles in pangenome graphs☆15Updated this week
- A genome-scale, fast, and precise segmental duplications mapping tool☆36Sep 11, 2024Updated last year
- Tool for decomposition centromeric assemblies and long reads into monomers☆38Sep 17, 2022Updated 3 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆222Updated this week
- Pangenome-based genome inference☆177Updated this week
- Tool to plot synteny and structural rearrangements between genomes☆351Jul 27, 2026Updated 2 weeks ago
- This is the standalone version of the EviAnn pipeline☆179Updated this week
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- alignment to variation graph inducer☆163Jul 29, 2026Updated last week
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆259Jul 10, 2026Updated last month
- ☆290Dec 29, 2025Updated 7 months ago
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 5 months ago
- k-mer based assembly evaluation☆351Jul 6, 2026Updated last month
- Neural network classification of TE☆101Apr 3, 2026Updated 4 months ago
- Extracting paths from assembly graphs☆24Jun 22, 2026Updated last month