Phased structural variant discovery in pangenomes
☆43Jul 27, 2026Updated last month
Alternatives and similar repositories for SVarp
Users that are interested in SVarp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆138Aug 12, 2026Updated 3 weeks ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆37Jun 12, 2025Updated last year
- General purpose utility related to GAF files☆37Aug 6, 2026Updated 3 weeks ago
- Genotyping of copy number sensitive allele-specific haplotypes☆29Updated this week
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl …☆13Jan 30, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆29Aug 12, 2026Updated 3 weeks ago
- ☆23Aug 28, 2026Updated last week
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆25Feb 16, 2026Updated 6 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆30Sep 21, 2024Updated last year
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated 2 years ago
- Constructing a pangenome gene graph☆212Aug 11, 2025Updated last year
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- Pangenome-based genome inference☆180Aug 18, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Variant Calling for the HPRC2☆16May 26, 2026Updated 3 months ago
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆14Apr 5, 2025Updated last year
- Telomere-to-Telomere diploid Indian Genome☆15Mar 5, 2026Updated 5 months ago
- Fast Approximate Pattern Matching using Search Schemes☆20Jul 11, 2026Updated last month
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 3 years ago
- Pangenome file formats based on SQLite☆16Aug 24, 2026Updated last week
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 5 years ago
- Evaluating genome assemblies☆125Mar 3, 2026Updated 6 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Multiple sequence alignment of long tandem repeats☆31Jun 23, 2026Updated 2 months ago
- Pangenome-based structural variation caller☆28Jan 20, 2026Updated 7 months ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆60Sep 6, 2025Updated 11 months ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆68May 26, 2026Updated 3 months ago
- ☆102Apr 22, 2024Updated 2 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- ☆42May 19, 2025Updated last year
- ☆50Jun 27, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- plane sweep filtering genome alignments☆24Jul 25, 2026Updated last month
- Evaluation and polishing workflows for T2T genome assemblies☆168Jun 26, 2026Updated 2 months ago
- Structural Variant Identification Method using Genome Assemblies☆147Sep 16, 2022Updated 3 years ago
- bioinformatics toolkit in rust☆107Aug 16, 2026Updated 2 weeks ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 10 months ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 4 months ago
- ☆45May 8, 2024Updated 2 years ago