asylvz / SVarpLinks
Phased structural variant discovery in pangenomes
☆36Updated last year
Alternatives and similar repositories for SVarp
Users that are interested in SVarp are comparing it to the libraries listed below
Sorting:
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated 2 months ago
- ☆21Updated 6 months ago
- A web-based, interactive pangenome visualization tool☆21Updated 2 years ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆37Updated 7 months ago
- Kmer Analysis of Pileups for Genotyping☆32Updated 2 weeks ago
- ☆36Updated last month
- ☆18Updated last year
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- ☆37Updated last year
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 9 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 3 months ago
- General purpose utility related to GAF files☆29Updated last week
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆50Updated 6 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 3 months ago
- ☆30Updated 4 months ago
- Programs implementing the trio-binning genome assembly method☆18Updated last year
- ☆37Updated 2 years ago
- SV calling for diploid assemblies☆28Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆45Updated 2 weeks ago
- Targeted genotyper for complex polymorphic genes☆21Updated last week
- Joint structural variant and copy number variant caller for HiFi sequencing data☆60Updated this week
- Tandem repeat genotyping with long reads☆30Updated 3 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 4 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- ULTRA Locates Tandemly Repetitive Areas☆32Updated 2 weeks ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆35Updated 3 years ago