asylvz / SVarpLinks
Phased structural variant discovery in pangenomes
☆35Updated last year
Alternatives and similar repositories for SVarp
Users that are interested in SVarp are comparing it to the libraries listed below
Sorting:
- ☆21Updated 6 months ago
- ☆17Updated last year
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆37Updated 6 months ago
- ☆37Updated last year
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated last month
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 8 months ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 2 months ago
- A web-based, interactive pangenome visualization tool☆21Updated 2 years ago
- ☆36Updated last month
- SV calling for diploid assemblies☆28Updated last year
- ☆36Updated 2 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 11 months ago
- ☆30Updated 3 months ago
- General purpose utility related to GAF files☆29Updated 2 weeks ago
- Kmer Analysis of Pileups for Genotyping☆32Updated this week
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- Correcting errors in noisy long reads using variation graphs☆52Updated 2 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 5 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37Updated 3 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- ☆42Updated last year
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆39Updated 10 months ago
- ☆30Updated 7 months ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆44Updated 2 months ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆39Updated 5 months ago
- ☆28Updated 11 months ago
- VNTR annotation using motif selection☆36Updated last week