bioinformatics toolkit in rust
☆105Feb 15, 2026Updated 2 months ago
Alternatives and similar repositories for rustybam
Users that are interested in rustybam are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Whole Genome Alignment Tools☆223Nov 6, 2025Updated 5 months ago
- gia: Genomic Interval Arithmetic☆66Aug 21, 2024Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 8 months ago
- bedtools-like functionality for interval sets in rust☆55Aug 5, 2025Updated 8 months ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆83Jan 20, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- base-accurate DNA sequence alignments using WFA and mashmap3☆215Mar 20, 2026Updated last month
- A Rust library and command line tool for working with genomic ranges and their data.☆100May 29, 2024Updated last year
- A high-performance BigWig and BigBed library in Rust☆114Feb 13, 2026Updated 2 months ago
- convert PAF format to CHAIN format☆35May 14, 2025Updated 11 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆41Sep 29, 2025Updated 7 months ago
- ☆32Feb 14, 2026Updated 2 months ago
- Fast and exact gap-affine partial order alignment☆68Apr 25, 2026Updated last week
- Efficient low-divergence mapping of long reads in minimizer space☆69Oct 7, 2023Updated 2 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37May 29, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Command line tools for IntSpan related bioinformatics operations☆12Apr 9, 2025Updated last year
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- Per-base per-nucleotide depth analysis☆149Mar 16, 2026Updated last month
- ☆188Feb 10, 2026Updated 2 months ago
- ☆102Apr 22, 2024Updated 2 years ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated last year
- Joint structural variant and copy number variant caller for HiFi sequencing data☆75Nov 4, 2025Updated 5 months ago
- Genome Assembly 102☆18Apr 23, 2025Updated last year
- Kmer Analysis of Pileups for Genotyping☆39Mar 6, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- base-level dotplots from PAF alignments☆33Sep 18, 2025Updated 7 months ago
- Rust package for constructing and analyzing phylogenies. (unpolished & unmaintained)☆15May 1, 2025Updated last year
- A complete diploid human genome☆146Mar 27, 2026Updated last month
- an API for intersections of genomic data☆149Mar 12, 2026Updated last month
- ☆21Feb 15, 2025Updated last year
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆128Mar 20, 2026Updated last month
- Genome browser hub for the T2T genomes and resources☆27Apr 7, 2026Updated 3 weeks ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Efficient querying of biological databases☆44Oct 27, 2025Updated 6 months ago
- This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.☆365Jan 29, 2026Updated 3 months ago
- Tools for fiberseq data written in rust.☆67Updated this week
- ☆11Dec 9, 2022Updated 3 years ago
- a minimal, scriptable genome browser for python☆54Dec 20, 2024Updated last year
- Randomly subsample sequencing reads or alignments☆260Apr 14, 2026Updated 2 weeks ago
- Simple pileup-based variant caller☆95Apr 25, 2025Updated last year