vollgerlab / rustybamLinks
bioinformatics toolkit in rust
☆93Updated 4 months ago
Alternatives and similar repositories for rustybam
Users that are interested in rustybam are comparing it to the libraries listed below
Sorting:
- Creating alignment plots from bam files☆107Updated this week
- gia: Genomic Interval Arithmetic☆66Updated last year
- an API for intersections of genomic data☆142Updated last week
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆82Updated 3 weeks ago
- Fasten toolkit, for streaming operations on fastq files☆81Updated 3 months ago
- Fast and exact gap-affine partial order alignment☆58Updated last week
- expressions on VCFs☆91Updated 9 months ago
- Grep for FASTQ files☆103Updated last month
- vcfdist: Accurately benchmarking phased variant calls☆84Updated 4 months ago
- a lexicographically-based GTF/GFF sorter☆38Updated 9 months ago
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last week
- BWT construction and search☆126Updated 3 weeks ago
- long read RNA-seq quantification☆103Updated this week
- ☆101Updated last year
- bedtools-like functionality for interval sets in rust☆55Updated 6 months ago
- A quality control tool for FASTQ files written in rust☆52Updated 7 months ago
- seqfu - Sequece Fastx Utilities☆126Updated last week
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆66Updated last week
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆41Updated last month
- Joint structural variant and copy number variant caller for HiFi sequencing data☆69Updated 3 months ago
- WDL workflows for variant calling and assembly using ONT☆38Updated last week
- Fast DNA search and [host] depletion using minimizers☆97Updated this week
- Tools to annotate genomes using long read transcriptomics data☆45Updated 5 years ago
- ☆58Updated 2 years ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆40Updated last month
- Per-base per-nucleotide depth analysis☆146Updated this week
- Tools for fiberseq data written in rust.☆63Updated last week
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆56Updated last year
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆52Updated 2 months ago
- A local-haplotagging-based small and structural variant caller☆94Updated 3 weeks ago