bioinformatics toolkit in rust
☆107May 14, 2026Updated last week
Alternatives and similar repositories for rustybam
Users that are interested in rustybam are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Whole Genome Alignment Tools☆224Nov 6, 2025Updated 6 months ago
- gia: Genomic Interval Arithmetic☆66Aug 21, 2024Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 9 months ago
- bedtools-like functionality for interval sets in rust☆55Aug 5, 2025Updated 9 months ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆84Jan 20, 2026Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- base-accurate DNA sequence alignments using WFA and mashmap3☆217Mar 20, 2026Updated 2 months ago
- A Rust library and command line tool for working with genomic ranges and their data.☆100May 29, 2024Updated last year
- A high-performance BigWig and BigBed library in Rust☆115May 6, 2026Updated 2 weeks ago
- convert PAF format to CHAIN format☆36May 14, 2025Updated last year
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆41Sep 29, 2025Updated 7 months ago
- ☆32Feb 14, 2026Updated 3 months ago
- Fast and exact gap-affine partial order alignment☆68Apr 25, 2026Updated 3 weeks ago
- Efficient low-divergence mapping of long reads in minimizer space☆69Oct 7, 2023Updated 2 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆38May 4, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Command line tools for IntSpan related bioinformatics operations☆12Apr 9, 2025Updated last year
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- Per-base per-nucleotide depth analysis☆149May 9, 2026Updated last week
- ☆190Feb 10, 2026Updated 3 months ago
- ☆101Apr 22, 2024Updated 2 years ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated last year
- Joint structural variant and copy number variant caller for HiFi sequencing data☆76Nov 4, 2025Updated 6 months ago
- Genome Assembly 102☆18Apr 23, 2025Updated last year
- Kmer Analysis of Pileups for Genotyping☆39Mar 6, 2026Updated 2 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- base-level dotplots from PAF alignments☆34Sep 18, 2025Updated 8 months ago
- Rust package for constructing and analyzing phylogenies. (unpolished & unmaintained)☆15May 1, 2025Updated last year
- A complete diploid human genome☆149May 7, 2026Updated 2 weeks ago
- an API for intersections of genomic data☆149Mar 12, 2026Updated 2 months ago
- ☆21Feb 15, 2025Updated last year
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆130Mar 20, 2026Updated 2 months ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- Genome browser hub for the T2T genomes and resources☆27Apr 7, 2026Updated last month
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Efficient querying of biological databases☆44Oct 27, 2025Updated 6 months ago
- This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.☆365Jan 29, 2026Updated 3 months ago
- Tools for fiberseq data written in rust.☆67May 12, 2026Updated last week
- ☆11Dec 9, 2022Updated 3 years ago
- a minimal, scriptable genome browser for python☆54Dec 20, 2024Updated last year
- Simple pileup-based variant caller☆95Apr 25, 2025Updated last year
- ☆128May 4, 2026Updated 2 weeks ago