Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
☆47Oct 13, 2024Updated last year
Alternatives and similar repositories for PanSN-spec
Users that are interested in PanSN-spec are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Jan 29, 2025Updated last year
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆19Apr 9, 2026Updated 5 months ago
- Extracting paths from assembly graphs☆26Jun 22, 2026Updated 3 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40Aug 20, 2026Updated last month
- ☆46Apr 18, 2026Updated 5 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- GFA visualizer, GPU-accelerated using Vulkan☆80Aug 2, 2022Updated 4 years ago
- the pangenome graph builder☆517Jul 24, 2026Updated 2 months ago
- Enumerating bubbles in pangenome graphs☆16Aug 26, 2026Updated last month
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆16Feb 20, 2023Updated 3 years ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆139Sep 8, 2026Updated 2 weeks ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 10 months ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆250Sep 16, 2026Updated last week
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year
- GRAph-based Finding of Individual Motif Occurrences☆33Aug 29, 2024Updated 2 years ago
- Extracts subgraphs or components from a graph in GFA format☆24Nov 18, 2024Updated last year
- Computational Pangenomics☆17Jun 1, 2022Updated 4 years ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆25Feb 16, 2026Updated 7 months ago
- ☆15Jun 29, 2021Updated 5 years ago
- implicit pangenome graph☆114Updated this week
- ☆30Aug 7, 2025Updated last year
- Mumemto: multi-MUM and MEM finding across pangenomes☆137Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- linearize and simplify variation graphs using blocked partial order alignment☆67Aug 21, 2026Updated last month
- GFA visualization tool - Rust reimplementation of odgi viz☆15May 2, 2026Updated 4 months ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆56May 17, 2022Updated 4 years ago
- base-level dotplots from PAF alignments☆36Sep 18, 2025Updated last year
- Python wrapper for wavefront alignment using WFA2-lib☆39Nov 19, 2024Updated last year
- ☆102Apr 22, 2024Updated 2 years ago
- ☆31Mar 27, 2024Updated 2 years ago
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 4 years ago
- A plant organellar Graphical Fragment Assembly toolkit☆17Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- FastK based version of Merqury☆33Jan 19, 2026Updated 8 months ago
- A bioinformatic toolkit to align genome assemblies into pangenome graphs☆130Aug 19, 2026Updated last month
- Statistics and analysis for variation graphs☆55Dec 17, 2024Updated last year
- Unzip assembly graphs with Hi-C data and/or long reads.☆29May 7, 2026Updated 4 months ago
- ☆142Aug 26, 2026Updated last month
- ☆15May 3, 2023Updated 3 years ago
- Prefix-renaming FASTA records really fast.☆18Jun 26, 2024Updated 2 years ago