Alternatives and similar repositories for PanSN-spec

Users that are interested in PanSN-spec are comparing it to the libraries listed below

• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆45Updated 9 months ago
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated 5 months ago
• mrvollger / NucFreq
  ☆38Updated this week
• tlemane / kmdiff
  Differential k-mer analysis
  ☆37Updated last year
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆47Updated 4 years ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• AndreaGuarracino / paf2chain
  convert PAF format to CHAIN format
  ☆32Updated 4 months ago
• GTPB / CPANG22
  Computational Pangenomics
  ☆17Updated 3 years ago
• rlorigro / GFAse
  Tool for globally phasing diploid assembly graphs with orthogonal data
  ☆40Updated 10 months ago
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆36Updated 2 months ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆44Updated 6 months ago
• schmeing / gapless
  Gapless provides combined scaffolding, gap-closing and assembly correction with long reads
  ☆37Updated 2 years ago
• thegenemyers / MERQURY.FK
  FastK based version of Merqury
  ☆28Updated 2 weeks ago
• agshumate / LiftoffTools
  ☆28Updated 2 years ago
• at-cg / RAFT
  ☆28Updated last year
• schatzlab / pseudohaploid
  Create a pseudohaploid assembly from a partially resolved diploid assembly
  ☆32Updated 5 years ago
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated 4 months ago
• ablab / VerityMap
  ☆37Updated 2 years ago
• codeatcg / VRPG
  an interactive visualization and interpretation framework of reference-projected pangenome graphs
  ☆37Updated 7 months ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• piosierra / pantera
  Identification of transposable element families from pangenome polymorphisms
  ☆53Updated 4 months ago
• marbl / rukki
  Extracting paths from assembly graphs
  ☆24Updated last year
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆28Updated last year
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆32Updated 2 years ago
• davidebolo1993 / cosigt
  COsine-based SImilarity Genotyper using pangenomes
  ☆21Updated last week
• BioinformaticsToolsmith / Red
  Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.
  ☆18Updated last year
• compbiol / CAMSA
  CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
  ☆24Updated 5 years ago
• moold / paf2dotplot
  Draw a dot plot from a paf alignment
  ☆34Updated 3 weeks ago
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆51Updated 2 years ago
• i10labtitech / GINGER
  ☆29Updated last year