Alternatives and similar repositories for PanSN-spec

Users that are interested in PanSN-spec are comparing it to the libraries listed below

• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated 2 months ago
• at-cg / RAFT
  ☆25Updated 10 months ago
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆40Updated 6 months ago
• mrvollger / NucFreq
  ☆35Updated last year
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆51Updated 2 years ago
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated 3 weeks ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆27Updated 9 months ago
• thegenemyers / MERQURY.FK
  FastK based version of Merqury
  ☆25Updated 2 weeks ago
• rlorigro / GFAse
  Tool for globally phasing diploid assembly graphs with orthogonal data
  ☆40Updated 7 months ago
• rchikhi / 2022-pangenome-graphs-intro
  ☆28Updated 8 months ago
• iqbal-lab-org / make_prg
  Code to create a PRG from a Multiple Sequence Alignment file
  ☆25Updated last week
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 4 years ago
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆27Updated last year
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆24Updated 4 months ago
• tlemane / kmdiff
  Differential k-mer analysis
  ☆36Updated last year
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• GTPB / CPANG22
  Computational Pangenomics
  ☆17Updated 3 years ago
• cumtr / PG-SCUnK
  PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers
  ☆18Updated 3 weeks ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆32Updated last year
• ablab / VerityMap
  ☆35Updated 2 years ago
• esrice / trio_binning
  Programs implementing the trio-binning genome assembly method
  ☆19Updated last year
• davidebolo1993 / cosigt
  ☆20Updated last week
• kavonrtep / dante
  Domain based annotation of transposable elements
  ☆19Updated last month
• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆31Updated 11 months ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆38Updated 2 months ago
• BioinformaticsToolsmith / Red
  Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.
  ☆17Updated last year
• vgteam / sv-genotyping-paper
  ☆30Updated 5 years ago
• human-pangenomics / hprc-tutorials
  ☆17Updated last year
• mkirsche / Grafter
  Scaffolding with Ultralong Reads
  ☆15Updated 4 years ago
• mktle / colorSV
  somatic SV calling on matched tumor-normal co-assembly graphs
  ☆22Updated 10 months ago