eblerjana / pangenieLinks
Pangenome-based genome inference
☆146Updated last month
Alternatives and similar repositories for pangenie
Users that are interested in pangenie are comparing it to the libraries listed below
Sorting:
- Tandem repeat genotyping and visualization from PacBio HiFi data☆124Updated last month
- Phased assembly variant caller☆126Updated 9 months ago
- Collection of tools for the analysis of CpG data☆94Updated 2 months ago
- A list of software for pangenomics☆128Updated 2 weeks ago
- Structural Variant Identification Method using Genome Assemblies☆123Updated 3 years ago
- Constructing a pangenome gene graph☆194Updated last month
- An ultra-fast and efficient genomic tool for coverage calculation☆157Updated 5 months ago
- accurate LiftOver tool for new genome assemblies☆134Updated last year
- Structural Variant Identification Method using Long Reads☆173Updated 4 years ago
- ☆138Updated 4 months ago
- ☆116Updated 2 weeks ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆111Updated last month
- Mapping pipeline for data generated using Arima-HiC☆80Updated last year
- Yet another k-mer analyzer☆143Updated last year
- Dfam Transposable Element Tools Docker container.☆100Updated this week
- Make colorful identity heatmaps of genomic sequence☆120Updated last year
- Application of pan-genome for population☆109Updated 11 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆117Updated 5 months ago
- tomato graph pangenome☆85Updated 2 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆158Updated 6 months ago
- ☆71Updated 5 years ago
- A tool for somatic structural variant calling using long reads☆145Updated last month
- High-precision TE Annotator☆129Updated this week
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆83Updated 4 years ago
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆118Updated 5 years ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- ☆161Updated 3 weeks ago
- Pipeline to convert a haploid assembly into diploid☆103Updated 7 months ago
- source code for EVM☆117Updated 9 months ago
- NLR-Annotator upload☆71Updated 2 years ago