Pangenome-based genome inference
☆182Sep 15, 2026Updated last month
Alternatives and similar repositories for pangenie
Users that are interested in pangenie are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆139Sep 8, 2026Updated last month
- use variant nesting information to flter overlapping sites from vg deconstruct output☆37Jun 12, 2025Updated last year
- Jasmine: SV Merging Across Samples☆262Dec 20, 2024Updated last year
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆36Aug 18, 2025Updated last year
- Constructing a pangenome gene graph☆212Aug 11, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆102Apr 22, 2024Updated 2 years ago
- ☆23Sep 22, 2026Updated 3 weeks ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆120Jun 6, 2021Updated 5 years ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆254Dec 16, 2025Updated 10 months ago
- Official home of genome aligner based upon notion of Cactus graphs☆714Updated this week
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 5 months ago
- linearize and simplify variation graphs using blocked partial order alignment☆67Aug 21, 2026Updated last month
- ☆33Jul 13, 2026Updated 3 months ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆251Sep 16, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Phased structural variant discovery in pangenomes☆44Oct 9, 2026Updated last week
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆421Aug 25, 2026Updated last month
- Prefix-renaming FASTA records really fast.☆18Jun 26, 2024Updated 2 years ago
- ☆291Dec 29, 2025Updated 9 months ago
- the pangenome graph builder☆519Jul 24, 2026Updated 2 months ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆62Sep 6, 2025Updated last year
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆277Oct 6, 2026Updated last week
- Genome Assembly 102☆19Apr 23, 2025Updated last year
- Mumemto: multi-MUM and MEM finding across pangenomes☆139Sep 21, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Integrate multiple genome assemblies into a pangenome graph☆37Jun 9, 2022Updated 4 years ago
- Graph realignment tools for structural variants☆172Dec 8, 2022Updated 3 years ago
- Structural variant toolkit for VCFs☆426Oct 3, 2026Updated 2 weeks ago
- A list of software for pangenomics☆201Updated this week
- Application of pan-genome for population☆122Oct 26, 2025Updated 11 months ago
- Phased assembly variant caller☆147Dec 4, 2024Updated last year
- Identification of transposable element families from pangenome polymorphisms☆57Aug 11, 2026Updated 2 months ago
- Multiple sequence alignment of long tandem repeats☆34Oct 9, 2026Updated last week
- Evaluating genome assemblies☆128Mar 3, 2026Updated 7 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- alignment to variation graph inducer☆165Jul 29, 2026Updated 2 months ago
- Kmer Analysis of Pileups for Genotyping☆43Jul 16, 2026Updated 3 months ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆25Feb 16, 2026Updated 8 months ago
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated last year
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- A genomic k-mer counter (and sequence utility) with nice features.☆193Jul 21, 2026Updated 2 months ago
- General purpose utility related to GAF files☆38Aug 6, 2026Updated 2 months ago