pangenome / impg
implicit pangenome graph
☆51Updated this week
Alternatives and similar repositories for impg:
Users that are interested in impg are comparing it to the libraries listed below
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆35Updated last week
- Identification of transposable element families from pangenome polymorphisms☆43Updated 5 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆36Updated 3 months ago
- ☆35Updated 10 months ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆59Updated this week
- ☆74Updated 3 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated 3 weeks ago
- ☆26Updated 5 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆30Updated last month
- ☆34Updated last year
- Compute N50/NG50 and auN/auNG☆31Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 3 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated last month
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated last year
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆91Updated this week
- ☆31Updated last month
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆32Updated 2 years ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆39Updated last month
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆70Updated last month
- somatic SV calling on matched tumor-normal co-assembly graphs☆18Updated 5 months ago
- ☆61Updated last week
- Mabs, a genome assembly tool which optimizes parameters of Hifiasm and Flye☆28Updated last month
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆45Updated 11 months ago
- Improved Phased Assembler☆27Updated 2 years ago
- assembly evaluation tool☆34Updated 2 years ago
- RepeatIdentifier☆54Updated 8 months ago
- Predict 5mC in PacBio HiFi reads☆36Updated this week
- ☆32Updated 4 years ago