pangenome / impgLinks
implicit pangenome graph
☆86Updated 2 weeks ago
Alternatives and similar repositories for impg
Users that are interested in impg are comparing it to the libraries listed below
Sorting:
- Statistics and analysis for variation graphs☆47Updated last year
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆42Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 7 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆38Updated 2 weeks ago
- Fast and exact gap-affine partial order alignment☆57Updated last month
- linearize and simplify variation graphs using blocked partial order alignment☆59Updated 5 months ago
- ☆31Updated 7 months ago
- convert PAF format to CHAIN format☆34Updated 7 months ago
- GFA visualizer, GPU-accelerated using Vulkan☆74Updated 3 years ago
- ☆68Updated last week
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆84Updated last month
- Mumemto: multi-MUM and MEM finding across pangenomes☆126Updated 3 weeks ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆50Updated last month
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆46Updated 2 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Differential k-mer analysis☆39Updated last year
- Efficient low-divergence mapping of long reads in minimizer space☆70Updated 2 years ago
- ☆38Updated 5 months ago
- Show pangenome graphs in an easy way☆56Updated 4 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 8 months ago
- Identification of transposable element families from pangenome polymorphisms☆54Updated 6 months ago
- ☆38Updated 2 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆39Updated 3 months ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆66Updated last month
- ☆39Updated 2 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆40Updated 2 weeks ago
- convert variation graph alignments to coverage maps over nodes☆26Updated 3 weeks ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago