implicit pangenome graph
☆89Feb 27, 2026Updated this week
Alternatives and similar repositories for impg
Users that are interested in impg are comparing it to the libraries listed below
Sorting:
- COsine SImilarity-based Genotyper using pangenomes☆31Feb 13, 2026Updated 2 weeks ago
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated last month
- Statistics and analysis for variation graphs☆49Dec 17, 2024Updated last year
- ☆18May 10, 2023Updated 2 years ago
- ☆18Jan 29, 2025Updated last year
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆119Feb 3, 2026Updated last month
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37May 29, 2025Updated 9 months ago
- A toolkit for exploring regions of variation in pangenomes☆14Feb 14, 2026Updated 2 weeks ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆128Dec 8, 2025Updated 2 months ago
- ☆101Apr 22, 2024Updated last year
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Feb 16, 2026Updated 2 weeks ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 6 months ago
- ☆29Mar 27, 2024Updated last year
- Extracts subgraphs or components from a graph in GFA format☆24Nov 18, 2024Updated last year
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 4 months ago
- Everything but the kitchen sink☆12Feb 6, 2025Updated last year
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆13Oct 1, 2025Updated 5 months ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 8 months ago
- Fast and exact gap-affine partial order alignment☆59Feb 3, 2026Updated last month
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 4 years ago
- ☆21Dec 13, 2024Updated last year
- ☆29Aug 7, 2025Updated 6 months ago
- General purpose utility related to GAF files☆29Jan 27, 2026Updated last month
- base-accurate DNA sequence alignments using WFA and mashmap3☆210Jan 30, 2026Updated last month
- Whole Genome Alignment Tools☆215Nov 6, 2025Updated 3 months ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 5 months ago
- generating hardware accelerators for pangenomic graph queries☆40Updated this week
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Optimal sequence-to-graph alignment with recombinations☆40Jul 25, 2025Updated 7 months ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 7 months ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- ☆11Dec 9, 2022Updated 3 years ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 4 months ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆36May 14, 2025Updated 9 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆40Dec 20, 2023Updated 2 years ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated last month
- GFA visualizer, GPU-accelerated using Vulkan☆76Aug 2, 2022Updated 3 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆44Oct 13, 2024Updated last year