Alternatives and similar repositories for impg:

Users that are interested in impg are comparing it to the libraries listed below

• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆37Updated 2 months ago
• marschall-lab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated this week
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆33Updated 3 months ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆35Updated last month
• pangenome / PanSN-spec
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆38Updated 4 months ago
• vikshiv / mumemto
  Mumemto: multi-MUM and MEM finding across pangenomes
  ☆67Updated last week
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆34Updated 2 months ago
• mrvollger / NucFreq
  ☆35Updated 11 months ago
• dfguan / asset
  assembly evaluation tool
  ☆34Updated 2 years ago
• tlemane / kmdiff
  Differential k-mer analysis
  ☆34Updated last year
• piosierra / pantera
  Identification of transposable element families from pangenome polymorphisms
  ☆44Updated 6 months ago
• daewoooo / SVbyEye
  ☆76Updated 4 months ago
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆51Updated 2 years ago
• mktle / colorSV
  somatic SV calling on matched tumor-normal co-assembly graphs
  ☆18Updated 6 months ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆31Updated last year
• shelkmike / Mabs
  Mabs, a genome assembly tool which optimizes parameters of Hifiasm and Flye
  ☆29Updated 2 months ago
• ablab / VerityMap
  ☆34Updated last year
• rlorigro / GFAse
  Tool for globally phasing diploid assembly graphs with orthogonal data
  ☆39Updated 2 months ago
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆55Updated 2 years ago
• mrvollger / SafFire
  ☆28Updated 6 months ago
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆47Updated 2 months ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 3 years ago
• maickrau / ribotin
  ☆32Updated this week
• pierrepeterlongo / back_to_sequences
  ☆41Updated 3 months ago
• rrwick / Rebaler
  reference-based long read assemblies of bacterial genomes
  ☆47Updated 3 years ago
• JensUweUlrich / ReadBouncer
  Fast and scalable nanopore adaptive sampling
  ☆33Updated last year
• SouthGreenPlatform / panache
  Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…
  ☆44Updated last year
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆73Updated 2 months ago
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆29Updated 2 months ago
• schmeing / gapless
  Gapless provides combined scaffolding, gap-closing and assembly correction with long reads
  ☆35Updated last year