implicit pangenome graph
☆108Jun 11, 2026Updated this week
Alternatives and similar repositories for impg
Users that are interested in impg are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- COsine SImilarity-based Genotyper using pangenomes☆36Jun 4, 2026Updated last week
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated 4 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆133Updated this week
- Statistics and analysis for variation graphs☆51Dec 17, 2024Updated last year
- A toolkit for exploring regions of variation in pangenomes☆14May 19, 2026Updated 3 weeks ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆19May 10, 2023Updated 3 years ago
- ☆18Jan 29, 2025Updated last year
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Feb 16, 2026Updated 3 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40May 4, 2026Updated last month
- ☆101Apr 22, 2024Updated 2 years ago
- ☆29Aug 7, 2025Updated 10 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 10 months ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆132Apr 17, 2026Updated last month
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 7 months ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆13Apr 28, 2026Updated last month
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- A multiscale pangenome browser☆30Apr 24, 2026Updated last month
- ☆21Dec 13, 2024Updated last year
- ☆31Mar 27, 2024Updated 2 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆217Mar 20, 2026Updated 2 months ago
- the pangenome graph builder☆501Mar 31, 2026Updated 2 months ago
- Fast and exact gap-affine partial order alignment☆68Apr 25, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- General purpose utility related to GAF files☆29May 20, 2026Updated 3 weeks ago
- generating hardware accelerators for pangenomic graph queries☆43May 26, 2026Updated 2 weeks ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆46Oct 13, 2024Updated last year
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 10 months ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- ☆21May 17, 2026Updated 3 weeks ago
- Wavefront alignment algorithm (WFA) in Golang☆32Jul 26, 2025Updated 10 months ago
- Extracts subgraphs or components from a graph in GFA format☆24Nov 18, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 9 months ago
- GFA visualizer, GPU-accelerated using Vulkan☆77Aug 2, 2022Updated 3 years ago
- Whole Genome Alignment Tools☆225Nov 6, 2025Updated 7 months ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆244May 1, 2026Updated last month
- ☆11Dec 9, 2022Updated 3 years ago