Alternatives and similar repositories for impg

Users that are interested in impg are comparing it to the libraries listed below

• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆40Updated 5 months ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆37Updated last month
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆35Updated this week
• vikshiv / mumemto
  Mumemto: multi-MUM and MEM finding across pangenomes
  ☆83Updated last week
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated last week
• piosierra / pantera
  Identification of transposable element families from pangenome polymorphisms
  ☆45Updated this week
• mrvollger / NucFreq
  ☆35Updated last year
• pangenome / PanSN-spec
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆38Updated 7 months ago
• bcgsc / ntSynt
  Detecting multi-genome synteny using minimizer graph mapping
  ☆78Updated last month
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆56Updated 2 years ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 4 years ago
• ChongLab / Inspector
  A tool for evaluate long-read de novo assembly results
  ☆47Updated 9 months ago
• codialab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆107Updated last week
• mrvollger / SafFire
  ☆29Updated 3 weeks ago
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated last month
• kjenike / panagram
  ☆62Updated last week
• ablab / VerityMap
  ☆35Updated 2 years ago
• maickrau / ribotin
  ☆35Updated 2 weeks ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆34Updated 2 years ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 6 months ago
• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆48Updated last year
• rlorigro / GFAse
  Tool for globally phasing diploid assembly graphs with orthogonal data
  ☆40Updated 6 months ago
• BioinformaticsToolsmith / Red
  Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.
  ☆17Updated last year
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆32Updated last year
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆24Updated 4 months ago
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆7Updated 4 months ago
• tlemane / kmdiff
  Differential k-mer analysis
  ☆36Updated last year
• shingocat / lrscaf
  TGS scaffolding
  ☆46Updated 3 years ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• schneebergerlab / fixchr
  ☆16Updated 6 months ago