pangenome / impg
implicit pangenome graph
☆58Updated this week
Alternatives and similar repositories for impg:
Users that are interested in impg are comparing it to the libraries listed below
- Statistics and analysis for variation graphs☆39Updated 4 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 6 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated 2 weeks ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last month
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆35Updated 5 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆36Updated 3 weeks ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆79Updated 2 weeks ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- ☆28Updated 9 months ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Identification of transposable element families from pangenome polymorphisms☆45Updated 2 months ago
- ☆36Updated last year
- Call select base modifications in PacBio HiFi reads☆7Updated 3 months ago
- Fast and exact gap-affine partial order alignment☆50Updated 3 weeks ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆39Updated 5 months ago
- ☆32Updated 2 weeks ago
- Differential k-mer analysis☆36Updated last year
- This is the standalone version of the EviAnn pipeline☆34Updated last week
- Full-length de novo viral haplotype reconstruction from noisy long reads☆18Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- Detecting multi-genome synteny using minimizer graph mapping☆77Updated this week
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆44Updated last year
- SV calling for diploid assemblies☆27Updated last year
- Pan-Genomic Matching Statistics☆52Updated last year
- Genome size estimation from long read overlaps☆55Updated 3 weeks ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Remove human reads from a sequencing run☆40Updated 7 months ago
- A Nextflow pipeline for evaluating assembly quality☆33Updated last week
- Simulating paired-end short sequencing reads from circular and linear genomes☆11Updated 3 years ago