ldenti / palssLinks
☆23Updated 3 months ago
Alternatives and similar repositories for palss
Users that are interested in palss are comparing it to the libraries listed below
Sorting:
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- General purpose utility related to GAF files☆29Updated 2 weeks ago
- Extracts subgraphs or components from a graph in GFA format☆24Updated last year
- Prefix-renaming FASTA records really fast.☆16Updated last year
- ☆17Updated 2 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆24Updated last month
- base-level dotplots from PAF alignments☆28Updated 2 months ago
- ☆28Updated 4 months ago
- recompute GFA link overlaps☆25Updated 3 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Updated 4 months ago
- Everything but the kitchen sink☆11Updated 10 months ago
- Long-read aligner to pangenome graphs☆28Updated last year
- Genome Assembly 102☆16Updated 7 months ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆20Updated 2 weeks ago
- A web-based, interactive pangenome visualization tool☆21Updated 2 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated 2 years ago
- ☆16Updated 3 years ago
- Phasing reads with secondary alignments☆21Updated last year
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 9 years ago
- COsine SImilarity-based Genotyper using pangenomes☆23Updated this week
- convert variation graph alignments to coverage maps over nodes☆26Updated last week
- Long read aligner for cyclic and acyclic pangenome graphs☆40Updated last year
- Benchmark structural variant calls against a reference set☆17Updated 2 weeks ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Updated last month
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 7 months ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Updated last year
- ☆15Updated 2 years ago