General purpose utility related to GAF files
☆29Jan 27, 2026Updated last month
Alternatives and similar repositories for gaftools
Users that are interested in gaftools are comparing it to the libraries listed below
Sorting:
- COsine SImilarity-based Genotyper using pangenomes☆31Feb 13, 2026Updated 2 weeks ago
- A toolkit for exploring regions of variation in pangenomes☆14Feb 14, 2026Updated 2 weeks ago
- ☆23Sep 9, 2025Updated 5 months ago
- Genotyping of copy number sensitive allele-specific haplotypes☆27Nov 6, 2025Updated 3 months ago
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated last month
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 2 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 6 months ago
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆18Feb 2, 2025Updated last year
- implicit pangenome graph☆89Updated this week
- ☆41Feb 15, 2026Updated 2 weeks ago
- ☆13May 27, 2025Updated 9 months ago
- Phased structural variant discovery in pangenomes☆39Dec 9, 2025Updated 2 months ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Sep 21, 2024Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Apr 23, 2025Updated 10 months ago
- Everything but the kitchen sink☆12Feb 6, 2025Updated last year
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 4 months ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 4 months ago
- Targeted genotyper for complex polymorphic genes☆36Updated this week
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Apr 5, 2025Updated 10 months ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆16Jan 12, 2026Updated last month
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆41Sep 29, 2025Updated 5 months ago
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆34May 23, 2025Updated 9 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆119Feb 3, 2026Updated 3 weeks ago
- Tandem repeat genotyping with long reads☆35Sep 23, 2025Updated 5 months ago
- the pangenome graph evaluator☆29Apr 12, 2021Updated 4 years ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 4 years ago
- ☆29Mar 27, 2024Updated last year
- ANI based satellite annotation☆23Nov 7, 2025Updated 3 months ago
- Genome Assembly 102☆17Apr 23, 2025Updated 10 months ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- Telomere-to-Telomere diploid Indian Genome☆14Feb 11, 2026Updated 2 weeks ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆36May 14, 2025Updated 9 months ago
- Pangenome-based genome inference☆156Dec 1, 2025Updated 3 months ago
- Extracts subgraphs or components from a graph in GFA format☆24Nov 18, 2024Updated last year
- Methylation analysis pipeline for genome graph☆15May 25, 2025Updated 9 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆54Mar 7, 2025Updated 11 months ago
- ☆46Nov 21, 2025Updated 3 months ago