marschall-lab / gaftoolsLinks
General purpose utility related to GAF files
☆29Updated 2 weeks ago
Alternatives and similar repositories for gaftools
Users that are interested in gaftools are comparing it to the libraries listed below
Sorting:
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 11 months ago
- A web-based, interactive pangenome visualization tool☆21Updated 2 years ago
- Convert HAL to VG☆22Updated last year
- recompute GFA link overlaps☆26Updated 2 years ago
- the pangenome graph evaluator☆28Updated 4 years ago
- ☆28Updated 10 months ago
- convert variation graph alignments to coverage maps over nodes☆24Updated 2 months ago
- Targeted genotyper for complex polymorphic genes☆21Updated 3 weeks ago
- Phased structural variant discovery in pangenomes☆35Updated last year
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37Updated 2 months ago
- Long-read aligner to pangenome graphs☆26Updated last year
- Extracts subgraphs or components from a graph in GFA format☆24Updated 9 months ago
- Detect and phase minor SNVs from long-read sequencing data☆13Updated 3 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 8 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 2 months ago
- Genome Assembly 102☆15Updated 4 months ago
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- ☆32Updated 2 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- ☆42Updated 3 weeks ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- Tandem repeat genotyping with long reads☆29Updated 3 months ago
- ☆21Updated 2 months ago
- ☆25Updated 2 weeks ago
- ☆17Updated last year
- Very simple and configurable all-in-one dotplot program☆13Updated 2 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 4 months ago