an interactive visualization and interpretation framework of reference-projected pangenome graphs
☆42Feb 15, 2025Updated last year
Alternatives and similar repositories for VRPG
Users that are interested in VRPG are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 3 years ago
- Genotyping of copy number sensitive allele-specific haplotypes☆29Jun 18, 2026Updated last month
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆135Updated this week
- Phased structural variant discovery in pangenomes☆43Apr 20, 2026Updated 3 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Sep 21, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆46Oct 13, 2024Updated last year
- ☆102Apr 22, 2024Updated 2 years ago
- Constructing a pangenome gene graph☆209Aug 11, 2025Updated 11 months ago
- A list of software for pangenomics☆196Updated this week
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 3 years ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆133Updated this week
- ☆19Jul 12, 2026Updated last week
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆68May 26, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- expressions on VCFs☆93Mar 17, 2026Updated 4 months ago
- ☆30Aug 7, 2025Updated 11 months ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆246Updated this week
- This is the standalone version of the EviAnn pipeline☆175Jun 24, 2026Updated 3 weeks ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 10 months ago
- Pipeline to convert a haploid assembly into diploid☆111Jan 23, 2025Updated last year
- ☆13Nov 15, 2017Updated 8 years ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆24Feb 16, 2026Updated 5 months ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆27Jun 25, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆23Jul 8, 2026Updated last week
- Targeted genotyper for complex polymorphic genes☆43Jul 7, 2026Updated last week
- tandemtwister: Tandem repeat genotyping tool☆19Feb 1, 2026Updated 5 months ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- GFA visualizer, GPU-accelerated using Vulkan☆78Aug 2, 2022Updated 3 years ago
- Telomere-to-Telomere diploid Indian Genome☆15Mar 5, 2026Updated 4 months ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆94Dec 3, 2025Updated 7 months ago
- A multiscale pangenome browser☆30Updated this week
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆60Sep 6, 2025Updated 10 months ago
- General purpose utility related to GAF files☆31May 20, 2026Updated 2 months ago
- SV calling for diploid assemblies☆32Mar 22, 2024Updated 2 years ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆112Jul 23, 2024Updated last year
- Alignment-free pangenome browser and analysis toolkit☆84May 18, 2026Updated 2 months ago
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆19Apr 9, 2026Updated 3 months ago