an interactive visualization and interpretation framework of reference-projected pangenome graphs
☆37Feb 15, 2025Updated last year
Alternatives and similar repositories for VRPG
Users that are interested in VRPG are comparing it to the libraries listed below
Sorting:
- Genotyping of copy number sensitive allele-specific haplotypes☆27Nov 6, 2025Updated 3 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Sep 21, 2024Updated last year
- ☆16Jan 14, 2026Updated last month
- A list of software for pangenomics☆175Feb 18, 2026Updated last week
- Phased structural variant discovery in pangenomes☆39Dec 9, 2025Updated 2 months ago
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 2 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆62Jan 29, 2026Updated last month
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 3 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆44Oct 13, 2024Updated last year
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆119Feb 3, 2026Updated 3 weeks ago
- Targeted genotyper for complex polymorphic genes☆36Updated this week
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- Constructing a pangenome gene graph☆204Aug 11, 2025Updated 6 months ago
- ☆101Apr 22, 2024Updated last year
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆27Updated this week
- Mumemto: multi-MUM and MEM finding across pangenomes☆128Dec 8, 2025Updated 2 months ago
- ☆23Sep 9, 2025Updated 5 months ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 5 months ago
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆18Feb 2, 2025Updated last year
- ☆13Nov 15, 2017Updated 8 years ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 4 months ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆234Feb 10, 2026Updated 2 weeks ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆73Feb 19, 2019Updated 7 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆34Oct 29, 2025Updated 4 months ago
- expressions on VCFs☆91Apr 19, 2025Updated 10 months ago
- FastK based version of Merqury☆32Jan 19, 2026Updated last month
- SV calling for diploid assemblies☆31Mar 22, 2024Updated last year
- a programme for visualization of short sequence alignment and path navigation in graphical pan-genome☆26Jan 23, 2024Updated 2 years ago
- Pipeline to convert a haploid assembly into diploid☆111Jan 23, 2025Updated last year
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆59Sep 6, 2025Updated 5 months ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆79Dec 3, 2025Updated 2 months ago
- A tool for evaluating long-read de novo assembly results☆52Aug 25, 2024Updated last year
- Simple tools for working with Hi-C data☆18Dec 19, 2018Updated 7 years ago
- Genomic Visualization Catalog☆13Oct 6, 2022Updated 3 years ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆16Jan 12, 2026Updated last month
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆106Jun 6, 2021Updated 4 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆39Nov 28, 2025Updated 2 months ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆103Jul 23, 2024Updated last year