an interactive visualization and interpretation framework of reference-projected pangenome graphs
☆42Feb 15, 2025Updated last year
Alternatives and similar repositories for VRPG
Users that are interested in VRPG are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Jan 14, 2026Updated 3 months ago
- Genotyping of copy number sensitive allele-specific haplotypes☆28Nov 6, 2025Updated 5 months ago
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 3 years ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆128Mar 20, 2026Updated last month
- Phased structural variant discovery in pangenomes☆42Apr 20, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Sep 21, 2024Updated last year
- A list of software for pangenomics☆183Apr 21, 2026Updated last week
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆63Apr 17, 2026Updated last week
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- Mumemto: multi-MUM and MEM finding across pangenomes☆130Apr 17, 2026Updated last week
- ☆102Apr 22, 2024Updated 2 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆46Oct 13, 2024Updated last year
- Constructing a pangenome gene graph☆206Aug 11, 2025Updated 8 months ago
- Targeted genotyper for complex polymorphic genes☆38Apr 22, 2026Updated last week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 3 years ago
- expressions on VCFs☆91Mar 17, 2026Updated last month
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆241Feb 10, 2026Updated 2 months ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Feb 16, 2026Updated 2 months ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 7 months ago
- Pipeline to convert a haploid assembly into diploid☆111Jan 23, 2025Updated last year
- ☆13Nov 15, 2017Updated 8 years ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆27Apr 17, 2026Updated last week
- ☆23Sep 9, 2025Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Telomere-to-Telomere diploid Indian Genome☆15Mar 5, 2026Updated last month
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆24Updated this week
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆84Dec 3, 2025Updated 4 months ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆36May 14, 2025Updated 11 months ago
- GFA visualizer, GPU-accelerated using Vulkan☆77Aug 2, 2022Updated 3 years ago
- General purpose utility related to GAF files☆29Updated this week
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- SV calling for diploid assemblies☆31Mar 22, 2024Updated 2 years ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆108Jul 23, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆30Aug 1, 2023Updated 2 years ago
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆19Apr 9, 2026Updated 3 weeks ago
- Simple tools for working with Hi-C data☆18Dec 19, 2018Updated 7 years ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆60Sep 6, 2025Updated 7 months ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆74Feb 19, 2019Updated 7 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆39Nov 28, 2025Updated 5 months ago