Alternatives and similar repositories for odgi:

Users that are interested in odgi are comparing it to the libraries listed below

• marbl / Winnowmap
  Long read / genome alignment software
  ☆272Updated 3 months ago
• maickrau / GraphAligner
  ☆264Updated 2 months ago
• dfguan / purge_dups
  haplotypic duplication identification tool
  ☆220Updated last year
• rrwick / Badread
  a long read simulator that can imitate many types of read problems
  ☆200Updated 6 months ago
• waveygang / wfmash
  base-accurate DNA sequence alignments using WFA and mashmap3
  ☆182Updated this week
• lh3 / gfatools
  Tools for manipulating sequence graphs in the GFA and rGFA formats
  ☆218Updated 6 months ago
• mahulchak / quickmerge
  A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
  ☆202Updated 2 years ago
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆143Updated 2 years ago
• VGP / vgp-assembly
  VGP repository for the genome assembly working group
  ☆190Updated last year
• GFA-spec / GFA-spec
  Graphical Fragment Assembly (GFA) Format Specification
  ☆204Updated 5 months ago
• lastz / lastz
  Program for aligning DNA sequences, a pairwise aligner.
  ☆206Updated last month
• wdecoster / nanocomp
  Comparison of multiple long read datasets
  ☆121Updated 2 months ago
• thegenemyers / FASTK
  A fast K-mer counter for high-fidelity shotgun datasets
  ☆123Updated this week
• PacificBiosciences / pbmm2
  A minimap2 frontend for PacBio native data formats
  ☆181Updated 2 months ago
• ruanjue / smartdenovo
  Ultra-fast de novo assembler using long noisy reads
  ☆131Updated 3 years ago
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆190Updated 4 months ago
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆174Updated 3 weeks ago
• chanzuckerberg / shasta
  [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads
  ☆272Updated 2 years ago
• ekg / seqwish
  alignment to variation graph inducer
  ☆145Updated this week
• smarco / WFA-paper
  Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment
  ☆200Updated 2 years ago
• lbcb-sci / herro
  HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …
  ☆205Updated last week
• wdecoster / nanofilt
  Filtering and trimming of long read sequencing data
  ☆198Updated 2 years ago
• hasindu2008 / f5c
  Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)
  ☆148Updated 3 weeks ago
• ksahlin / strobealign
  Aligns short reads using dynamic seed size with strobemers
  ☆164Updated last week
• lbcb-sci / racon
  Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads
  ☆212Updated last year
• PacificBiosciences / ccs
  CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)
  ☆116Updated 10 months ago
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆274Updated 3 months ago
• BGI-Qingdao / TGS-GapCloser
  A gap-closing software tool that uses long reads to enhance genome assembly.
  ☆191Updated 5 months ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆156Updated last year
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆217Updated last month