dubssieg / pancatLinks
Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
☆35Updated 3 months ago
Alternatives and similar repositories for pancat
Users that are interested in pancat are comparing it to the libraries listed below
Sorting:
- Minimizer-based assembly scaffolding and mapping using long reads☆43Updated 10 months ago
- De novo construction of isoforms from long-read data☆31Updated 2 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 11 months ago
- General purpose utility related to GAF files☆29Updated 3 weeks ago
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆28Updated 5 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated 2 months ago
- Phased structural variant discovery in pangenomes☆35Updated last year
- ☆44Updated last month
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37Updated 3 months ago
- This is the Haplotypo repository☆20Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 4 months ago
- AlfaPang builds pangenome graphs without alignments or references.☆10Updated 2 months ago
- ☆17Updated last year
- Pipeline for the identification of (coding) gene structures in draft genomes.☆30Updated last year
- PECAT, a phased error correct and assembly tool☆54Updated last month
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 8 months ago
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆23Updated 4 months ago
- ☆42Updated 3 weeks ago
- A web-based, interactive pangenome visualization tool☆21Updated 2 years ago
- convert variation graph alignments to coverage maps over nodes☆24Updated 2 months ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆28Updated last week
- Kmer Analysis of Pileups for Genotyping☆32Updated this week
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆22Updated last month
- Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat☆22Updated 3 months ago
- ☆25Updated 3 weeks ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- Genome Assembly 102☆15Updated 4 months ago
- Correcting errors in noisy long reads using variation graphs☆52Updated 2 years ago
- De novo tandem repeat calling from PacBio HiFi data☆18Updated 2 months ago