dubssieg / pancatLinks
Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
☆35Updated 7 months ago
Alternatives and similar repositories for pancat
Users that are interested in pancat are comparing it to the libraries listed below
Sorting:
- ☆18Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 7 months ago
- ☆45Updated 3 weeks ago
- General purpose utility related to GAF files☆29Updated 2 weeks ago
- De novo construction of isoforms from long-read data☆35Updated 6 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆36Updated last week
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆40Updated last week
- Phased structural variant discovery in pangenomes☆39Updated this week
- AlfaPang builds pangenome graphs without alignments or references.☆14Updated last month
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆34Updated 2 months ago
- convert variation graph alignments to coverage maps over nodes☆26Updated last week
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆29Updated 3 weeks ago
- Kmer Analysis of Pileups for Genotyping☆34Updated last week
- Close assembly gaps using long-reads at high accuracy.☆49Updated last year
- PECAT, a phased error correct and assembly tool☆56Updated last week
- Minimizer-based assembly scaffolding and mapping using long reads☆44Updated last year
- A tool for simulating random mutations in any genome☆43Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 6 months ago
- ☆40Updated 4 months ago
- Pipeline for the identification of (coding) gene structures in draft genomes.☆30Updated last year
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Updated 3 months ago
- Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).☆16Updated last week
- Linear-time de novo Long Read Assembler☆41Updated last month
- Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat☆25Updated 7 months ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆20Updated 3 weeks ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆30Updated 6 months ago
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆22Updated 2 months ago
- This is the Haplotypo repository☆22Updated last year
- Convert HAL to VG☆23Updated last year