dubssieg / pancat

Related projects ⓘ

Alternatives and complementary repositories for pancat

• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆25Updated last month
• pangenome / pgge
  the pangenome graph evaluator
  ☆23Updated 3 years ago
• fawaz-dabbaghieh / bubble_gun
  ☆39Updated this week
• marschall-lab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆34Updated 8 months ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆23Updated 4 months ago
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆33Updated last week
• pierrepeterlongo / back_to_sequences
  ☆40Updated this week
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆31Updated 3 weeks ago
• pangenome / PanSN-spec
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆31Updated 3 weeks ago
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆22Updated this week
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆21Updated 3 months ago
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆21Updated last week
• w-gao / pgv
  A web-based, interactive pangenome visualization tool
  ☆19Updated last year
• mrvollger / NucFreq
  ☆32Updated 8 months ago
• human-pangenomics / hprc-tutorials
  ☆12Updated 6 months ago
• pangenome / maffer
  extract MSAs from genome variation graphs
  ☆33Updated 4 years ago
• lh3 / gffio
  ☆32Updated last year
• pangenome / impg
  implicit pangenome graph
  ☆42Updated last week
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆23Updated 7 months ago
• marbl / rukki
  Extracting paths from assembly graphs
  ☆22Updated 6 months ago
• merlyescalona / yagcloser
  YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.
  ☆10Updated last year
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆29Updated 3 years ago
• pangenome / HPRCyear1v2genbank
  building a human pangenome from the HPRCy1v2 genbank accessioned assemblies
  ☆13Updated last year
• T2T-apes / ape_pangenome
  pangenome analyses for complete genomes of great apes (and gibbon)
  ☆16Updated last month
• esrice / trio_binning
  Programs implementing the trio-binning genome assembly method
  ☆19Updated 11 months ago
• vpc-ccg / sedef
  Identification of segmental duplications in the genome
  ☆26Updated 2 years ago
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆16Updated 7 months ago
• davidebolo1993 / cosigt
  ☆11Updated this week
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 6 years ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆35Updated 10 months ago