dubssieg / pancatLinks
Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
☆34Updated 2 months ago
Alternatives and similar repositories for pancat
Users that are interested in pancat are comparing it to the libraries listed below
Sorting:
- Minimizer-based assembly scaffolding and mapping using long reads☆42Updated 9 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated last month
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last month
- General purpose utility related to GAF files☆28Updated last week
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 9 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 2 months ago
- convert variation graph alignments to coverage maps over nodes☆24Updated 3 weeks ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated 3 weeks ago
- Convert HAL to VG☆22Updated 11 months ago
- ☆41Updated 2 months ago
- This is the Haplotypo repository☆20Updated last year
- ☆17Updated last year
- De novo construction of isoforms from long-read data☆31Updated last month
- Phasing reads with secondary alignments☆19Updated 7 months ago
- Phased structural variant discovery in pangenomes☆34Updated last year
- PECAT, a phased error correct and assembly tool☆54Updated 3 weeks ago
- A web-based, interactive pangenome visualization tool☆21Updated 2 years ago
- Pipeline for the identification of (coding) gene structures in draft genomes.☆29Updated last year
- ☆28Updated 9 months ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- ☆20Updated this week
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆27Updated 7 months ago
- Linear-time de novo Long Read Assembler☆42Updated 5 months ago
- Toolkit to convert the output of common variant calling programs to VCF☆23Updated 2 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆40Updated 3 months ago
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆22Updated last week
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆23Updated 3 months ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆18Updated last month
- ☆24Updated 7 months ago
- Kmer Analysis of Pileups for Genotyping☆31Updated 3 weeks ago