PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers
☆23Feb 16, 2026Updated 4 months ago
Alternatives and similar repositories for PG-SCUnK
Users that are interested in PG-SCUnK are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- COsine SImilarity-based Genotyper using pangenomes☆36Jun 4, 2026Updated 2 weeks ago
- Statistics and analysis for variation graphs☆51Dec 17, 2024Updated last year
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆133Updated this week
- implicit pangenome graph☆108Jun 11, 2026Updated last week
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 7 months ago
- Phased structural variant discovery in pangenomes☆42Apr 20, 2026Updated last month
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 7 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆46Oct 13, 2024Updated last year
- A list of software for pangenomics☆192May 21, 2026Updated 3 weeks ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆132Apr 17, 2026Updated 2 months ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆13Apr 28, 2026Updated last month
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Constructing a pangenome gene graph☆208Aug 11, 2025Updated 10 months ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 10 months ago
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated 4 months ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 3 years ago
- generating hardware accelerators for pangenomic graph queries☆43May 26, 2026Updated 3 weeks ago
- Whole genome visualization and comparative genomics in R☆22Feb 18, 2025Updated last year
- Multiple sequence alignment of long tandem repeats☆29May 12, 2026Updated last month
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 9 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- GRAph-based Finding of Individual Motif Occurrences☆31Aug 29, 2024Updated last year
- ☆18Apr 28, 2026Updated last month
- FastK based version of Merqury☆32Jan 19, 2026Updated 5 months ago
- ☆18Jan 29, 2025Updated last year
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆26Apr 9, 2026Updated 2 months ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆246May 1, 2026Updated last month
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- Telomere-to-Telomere diploid Indian Genome☆15Mar 5, 2026Updated 3 months ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated last week
- Optimal sequence-to-graph alignment with recombinations☆41Apr 28, 2026Updated last month
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆45Jun 10, 2026Updated last week
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 10 months ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆14Apr 5, 2025Updated last year
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆16Feb 20, 2023Updated 3 years ago