Alternatives and similar repositories for PG-SCUnK

Users that are interested in PG-SCUnK are comparing it to the libraries listed below

• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated 8 months ago
• davidebolo1993 / cosigt
  COsine SImilarity-based Genotyper using pangenomes
  ☆24Updated last week
• at-cg / RAFT
  ☆30Updated last year
• MoinSebi / gfa2bin
  ☆28Updated 4 months ago
• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆20Updated last year
• w-gao / pgv
  A web-based, interactive pangenome visualization tool
  ☆21Updated 2 years ago
• pangenome / PanSN-spec
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆42Updated last year
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆23Updated last year
• thegenemyers / MERQURY.FK
  FastK based version of Merqury
  ☆30Updated 3 months ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆31Updated 6 months ago
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated 7 months ago
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆24Updated last year
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆28Updated last year
• GTPB / CPANG22
  Computational Pangenomics
  ☆17Updated 3 years ago
• pangenome / pgge
  the pangenome graph evaluator
  ☆29Updated 4 years ago
• human-pangenomics / hprc-tutorials
  ☆19Updated last year
• ekg / fastix
  Prefix-renaming FASTA records really fast.
  ☆17Updated last year
• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆29Updated last month
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆36Updated 3 weeks ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆40Updated 2 years ago
• marbl / training
  Genome Assembly 102
  ☆17Updated 8 months ago
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆21Updated last year
• marbl / rukki
  Extracting paths from assembly graphs
  ☆24Updated last year
• TravisWheelerLab / BATH
  Better Alignments with Translated HMMER
  ☆24Updated this week
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆22Updated 4 years ago
• tlemane / kmdiff
  Differential k-mer analysis
  ☆39Updated last year
• Markusjsommer / TD2
  TD2
  ☆29Updated 3 weeks ago
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 3 years ago
• mikolmogorov / maf2synteny
  A tool for recovering synteny blocks from multiple alignment
  ☆32Updated 4 years ago
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆26Updated 3 weeks ago