cumtr / PG-SCUnKLinks
PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers
☆19Updated last week
Alternatives and similar repositories for PG-SCUnK
Users that are interested in PG-SCUnK are comparing it to the libraries listed below
Sorting:
- COsine-based SImilarity Genotyper using pangenomes☆21Updated this week
- ☆28Updated last year
- ☆25Updated last month
- A web-based, interactive pangenome visualization tool☆21Updated 2 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 3 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated last year
- FastK based version of Merqury☆28Updated 3 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆39Updated 11 months ago
- Extracts subgraphs or components from a graph in GFA format☆24Updated 10 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 4 months ago
- Computational Pangenomics☆17Updated 3 years ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆34Updated 2 months ago
- Phasing reads with secondary alignments☆20Updated 9 months ago
- ☆18Updated last year
- TD2☆17Updated 3 months ago
- Prefix-renaming FASTA records really fast.☆16Updated last year
- ☆17Updated 2 months ago
- Genome Assembly 102☆15Updated 4 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 11 months ago
- recompute GFA link overlaps☆25Updated 3 years ago
- Infering ancestral synteny with hierarchical orthologous groups☆29Updated this week
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 3 months ago
- Convert HAL to VG☆22Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- the pangenome graph evaluator☆28Updated 4 years ago
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆22Updated last month
- Improved Phased Assembler☆28Updated 3 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- Kmer Analysis of Pileups for Genotyping☆32Updated 2 weeks ago