PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers
☆25Feb 16, 2026Updated 5 months ago
Alternatives and similar repositories for PG-SCUnK
Users that are interested in PG-SCUnK are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- COsine SImilarity-based Genotyper using pangenomes☆36Updated this week
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- Statistics and analysis for variation graphs☆52Dec 17, 2024Updated last year
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- implicit pangenome graph☆109Updated this week
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆136Jul 20, 2026Updated last week
- ☆18Jan 29, 2025Updated last year
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- A list of software for pangenomics☆197Updated this week
- ☆32Jun 18, 2026Updated last month
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- HELIANO is a software for detection and classification of Helitron-like elements.☆34Jul 13, 2026Updated 2 weeks ago
- ☆44Dec 29, 2025Updated 7 months ago
- Constructing a pangenome gene graph☆209Aug 11, 2025Updated 11 months ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 9 months ago
- plane sweep filtering genome alignments☆24Updated this week
- Phased structural variant discovery in pangenomes☆43Updated this week
- Variant Calling for the HPRC2☆16May 26, 2026Updated 2 months ago
- A multiscale pangenome browser☆30Jul 18, 2026Updated last week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 9 months ago
- Whole genome visualization and comparative genomics in R☆24Feb 18, 2025Updated last year
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 11 months ago
- TR annotation tool VAMPIRE☆19Jun 22, 2026Updated last month
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Jun 3, 2026Updated last month
- ☆68Apr 9, 2024Updated 2 years ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆133Jul 15, 2026Updated 2 weeks ago
- pangenome from maximal blocks in an MSA☆11Sep 17, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- This is the standalone version of the EviAnn pipeline☆176Jun 24, 2026Updated last month
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- ☆22Jul 13, 2026Updated 2 weeks ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆24Apr 25, 2024Updated 2 years ago
- Identification of transposable element families from pangenome polymorphisms☆57Jun 8, 2026Updated last month
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆46Oct 13, 2024Updated last year
- Allele-specific modeling of diploid Hi-C data☆12May 6, 2021Updated 5 years ago