w-gao / pgvLinks
A web-based, interactive pangenome visualization tool
☆21Updated 2 years ago
Alternatives and similar repositories for pgv
Users that are interested in pgv are comparing it to the libraries listed below
Sorting:
- ☆28Updated last year
- the pangenome graph evaluator☆28Updated 4 years ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆19Updated last month
- General purpose utility related to GAF files☆29Updated last month
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 3 months ago
- Phased structural variant discovery in pangenomes☆36Updated last year
- COsine-based SImilarity Genotyper using pangenomes☆21Updated last week
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 4 months ago
- ☆25Updated 2 months ago
- recompute GFA link overlaps☆25Updated 3 years ago
- Differential k-mer analysis☆37Updated last year
- Multiple sequence alignment of long tandem repeats☆21Updated last month
- Targeted genotyper for complex polymorphic genes☆21Updated 2 weeks ago
- Convert HAL to VG☆22Updated last year
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆37Updated 7 months ago
- convert variation graph alignments to coverage maps over nodes☆24Updated 3 months ago
- ☆28Updated last year
- FastK based version of Merqury☆28Updated 2 weeks ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 5 months ago
- Statistics and analysis for variation graphs☆45Updated 9 months ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆35Updated 3 years ago
- ☆18Updated last year
- ☆36Updated 2 months ago
- ☆38Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 7 months ago
- TD2☆18Updated 4 months ago