w-gao / pgvLinks
A web-based, interactive pangenome visualization tool
☆21Updated 2 years ago
Alternatives and similar repositories for pgv
Users that are interested in pgv are comparing it to the libraries listed below
Sorting:
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 9 months ago
- ☆28Updated 8 months ago
- General purpose utility related to GAF files☆28Updated 3 weeks ago
- ☆20Updated last week
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 2 weeks ago
- Multiple sequence alignment of long tandem repeats☆16Updated 2 months ago
- ☆24Updated 6 months ago
- the pangenome graph evaluator☆27Updated 4 years ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆18Updated 3 weeks ago
- ☆17Updated last year
- Phased structural variant discovery in pangenomes☆34Updated last year
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆36Updated 4 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 8 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 3 weeks ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated 10 months ago
- convert variation graph alignments to coverage maps over nodes☆24Updated this week
- A Hi-C scaffolding method☆23Updated 3 years ago
- ☆25Updated 10 months ago
- Computational Pangenomics☆17Updated 3 years ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆40Updated 7 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Domain based annotation of transposable elements☆19Updated last month
- ☆35Updated last year
- recompute GFA link overlaps☆25Updated 2 years ago
- Programs implementing the trio-binning genome assembly method☆19Updated last year
- Very simple and configurable all-in-one dotplot program☆13Updated 2 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- ☆21Updated last week
- Extracting paths from assembly graphs☆23Updated last year
- ☆35Updated last week