w-gao / pgv
A web-based, interactive pangenome visualization tool
☆21Updated last year
Alternatives and similar repositories for pgv:
Users that are interested in pgv are comparing it to the libraries listed below
- ☆35Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 6 months ago
- ☆21Updated 5 months ago
- the pangenome graph evaluator☆26Updated 3 years ago
- FastK based version of Merqury☆22Updated this week
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆37Updated 5 months ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆39Updated 3 months ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆36Updated last month
- Statistics and analysis for variation graphs☆38Updated 3 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated 3 weeks ago
- Phased structural variant discovery in pangenomes☆32Updated 9 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last week
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 9 months ago
- ☆22Updated 7 months ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- Computational Pangenomics☆17Updated 2 years ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆18Updated 7 months ago
- Domain based annotation of transposable elements☆19Updated last month
- General purpose utility related to GAF files☆22Updated this week
- ☆30Updated 5 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- ☆14Updated 11 months ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- ☆32Updated 2 years ago
- convert variation graph alignments to coverage maps over nodes☆23Updated last month
- Programs implementing the trio-binning genome assembly method☆19Updated last year
- SV calling for diploid assemblies☆26Updated last year
- Extracting paths from assembly graphs☆22Updated 10 months ago