Alternatives and similar repositories for pgv

Users that are interested in pgv are comparing it to the libraries listed below

• rchikhi / 2022-pangenome-graphs-intro
  ☆28Updated last year
• pangenome / pgge
  the pangenome graph evaluator
  ☆29Updated 4 years ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆29Updated last year
• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆29Updated 2 weeks ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆31Updated 8 months ago
• davidebolo1993 / cosigt
  COsine SImilarity-based Genotyper using pangenomes
  ☆25Updated 2 weeks ago
• cumtr / PG-SCUnK
  PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers
  ☆23Updated last week
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆37Updated 8 months ago
• jeizenga / centrolign
  Multiple sequence alignment of long tandem repeats
  ☆25Updated last month
• asylvz / SVarp
  Phased structural variant discovery in pangenomes
  ☆39Updated 2 months ago
• MoinSebi / gfa2bin
  ☆28Updated 6 months ago
• maickrau / ribotin
  ☆38Updated last month
• at-cg / RAFT
  Improved long-read assembly by preserving contained reads
  ☆30Updated last year
• mktle / colorSV
  somatic SV calling on matched tumor-normal co-assembly graphs
  ☆22Updated last year
• pangenome / gfalace
  lace up GFA files using panSN path name sub-ranges to coordinate the lacing
  ☆14Updated 6 months ago
• tlemane / kmdiff
  Differential k-mer analysis
  ☆39Updated 2 years ago
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 3 years ago
• vollgerlab / NucFreq
  ☆38Updated 4 months ago
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆23Updated last year
• codeatcg / VRPG
  an interactive visualization and interpretation framework of reference-projected pangenome graphs
  ☆37Updated 11 months ago
• thegenemyers / MERQURY.FK
  FastK based version of Merqury
  ☆30Updated 3 weeks ago
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆30Updated last year
• ablab / stringdecomposer
  Tool for decomposition centromeric assemblies and long reads into monomers
  ☆37Updated 3 years ago
• schatzlab / pseudohaploid
  Create a pseudohaploid assembly from a partially resolved diploid assembly
  ☆32Updated 6 years ago
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆22Updated 4 years ago
• pangenome / PanSN-spec
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆44Updated last year
• marbl / rukki
  Extracting paths from assembly graphs
  ☆24Updated last year
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆35Updated last week
• human-pangenomics / hprc-tutorials
  ☆19Updated last year
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆27Updated 3 weeks ago