A web-based, interactive pangenome visualization tool
☆21Apr 10, 2023Updated 3 years ago
Alternatives and similar repositories for pgv
Users that are interested in pgv are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Multiple sequence alignment of long tandem repeats☆34Updated this week
- Genotyping of copy number sensitive allele-specific haplotypes☆29Aug 28, 2026Updated 2 months ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated last year
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆10Oct 16, 2026Updated 2 weeks ago
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated last year
- Efficient low-divergence mapping of long reads in minimizer space☆70Oct 7, 2023Updated 3 years ago
- ☆12Oct 25, 2026Updated last week
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆14Apr 5, 2025Updated last year
- Evaluating genome assemblies☆129Oct 21, 2026Updated last week
- General purpose utility related to GAF files☆38Aug 6, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- pangenome analyses for complete genomes of great apes (and gibbon)☆21Oct 12, 2024Updated 2 years ago
- ☆29Sep 28, 2024Updated 2 years ago
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆19Apr 9, 2026Updated 6 months ago
- GFA visualization tool - Rust reimplementation of odgi viz☆15May 2, 2026Updated 6 months ago
- ☆32Dec 16, 2022Updated 3 years ago
- PANPROVA: PANgenomic PROkaryotic eVolution of full Assemblies☆10Jun 14, 2026Updated 4 months ago
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 6 years ago
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- A multiscale pangenome browser☆36Jul 18, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆32Jun 18, 2026Updated 4 months ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- Pangenome diversity from k-mers or genes☆13Sep 22, 2026Updated last month
- plane sweep filtering genome alignments☆24Sep 28, 2026Updated last month
- Mumemto: multi-MUM and MEM finding across pangenomes☆139Sep 21, 2026Updated last month
- the pangenome graph evaluator☆29Apr 12, 2021Updated 5 years ago
- COsine SImilarity-based Genotyper using pangenomes☆40Oct 12, 2026Updated 3 weeks ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆23Aug 12, 2026Updated 2 months ago
- convert variation graph alignments to coverage maps over nodes☆28Jan 21, 2026Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspri…☆15Nov 20, 2023Updated 2 years ago
- ☆25Sep 22, 2026Updated last month
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- PGR-TK: Pangenome Research Tool Kit☆23Apr 19, 2026Updated 6 months ago
- online variation graph induction☆12Oct 21, 2025Updated last year
- A Generative Pre-Trained Transformer Package for Pangenomes☆53May 19, 2025Updated last year
- rust tool to choose the best read alignment between haploids to a diploid reference genome☆21Oct 20, 2026Updated last week