Alternatives and similar repositories for pgv

Users that are interested in pgv are comparing it to the libraries listed below

• rchikhi / 2022-pangenome-graphs-intro
  ☆28Updated last year
• pangenome / pgge
  the pangenome graph evaluator
  ☆29Updated 4 years ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆27Updated last year
• cumtr / PG-SCUnK
  PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers
  ☆19Updated last month
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated 5 months ago
• codeatcg / VRPG
  an interactive visualization and interpretation framework of reference-projected pangenome graphs
  ☆37Updated 8 months ago
• asylvz / SVarp
  Phased structural variant discovery in pangenomes
  ☆37Updated last year
• tlemane / kmdiff
  Differential k-mer analysis
  ☆37Updated last year
• jeizenga / centrolign
  Multiple sequence alignment of long tandem repeats
  ☆22Updated 2 months ago
• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆29Updated last month
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆45Updated 10 months ago
• davidebolo1993 / cosigt
  COsine-based SImilarity Genotyper using pangenomes
  ☆21Updated last week
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated 4 months ago
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 3 years ago
• MoinSebi / gfa2bin
  ☆25Updated 2 months ago
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆22Updated last year
• at-cg / RAFT
  ☆28Updated last year
• maickrau / ribotin
  ☆36Updated 3 months ago
• pangenome / PanSN-spec
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆40Updated last year
• schatzlab / pseudohaploid
  Create a pseudohaploid assembly from a partially resolved diploid assembly
  ☆32Updated 5 years ago
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆26Updated last week
• mktle / colorSV
  somatic SV calling on matched tumor-normal co-assembly graphs
  ☆22Updated last year
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated 6 months ago
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆36Updated last week
• tprodanov / locityper
  Targeted genotyper for complex polymorphic genes
  ☆28Updated last week
• mrvollger / NucFreq
  ☆38Updated 3 weeks ago
• ablab / stringdecomposer
  Tool for decomposition centromeric assemblies and long reads into monomers
  ☆35Updated 3 years ago
• marbl / rukki
  Extracting paths from assembly graphs
  ☆24Updated last year
• Markusjsommer / TD2
  TD2
  ☆22Updated 4 months ago
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆29Updated last year