w-gao / pgvLinks
A web-based, interactive pangenome visualization tool
☆21Updated 2 years ago
Alternatives and similar repositories for pgv
Users that are interested in pgv are comparing it to the libraries listed below
Sorting:
- ☆28Updated last year
- the pangenome graph evaluator☆29Updated 4 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated last year
- General purpose utility related to GAF files☆29Updated last month
- ☆28Updated 5 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 7 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆31Updated 7 months ago
- COsine SImilarity-based Genotyper using pangenomes☆24Updated 3 weeks ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Updated last month
- recompute GFA link overlaps☆25Updated 3 years ago
- Phased structural variant discovery in pangenomes☆39Updated last month
- Multiple sequence alignment of long tandem repeats☆25Updated last week
- ☆30Updated last year
- Differential k-mer analysis☆39Updated last year
- convert variation graph alignments to coverage maps over nodes☆26Updated last month
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆37Updated 11 months ago
- Statistics and analysis for variation graphs☆47Updated last year
- Pangenome Mutation-Annotated Networks☆26Updated last week
- Extracting paths from assembly graphs☆24Updated last year
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 6 years ago
- ☆38Updated 3 weeks ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 10 months ago
- Convert HAL to VG☆23Updated last year
- ☆19Updated last year
- ☆38Updated 3 months ago
- TD2☆31Updated this week
- Extracts subgraphs or components from a graph in GFA format☆24Updated last year
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆14Updated 3 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆36Updated last week
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year