A web-based, interactive pangenome visualization tool
☆21Apr 10, 2023Updated 3 years ago
Alternatives and similar repositories for pgv
Users that are interested in pgv are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Multiple sequence alignment of long tandem repeats☆26Jan 9, 2026Updated 3 months ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 5 months ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆39Feb 15, 2025Updated last year
- General purpose utility related to GAF files☆29Apr 2, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- COsine SImilarity-based Genotyper using pangenomes☆32Feb 13, 2026Updated 2 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆40Dec 20, 2023Updated 2 years ago
- Genotyping of copy number sensitive allele-specific haplotypes☆28Nov 6, 2025Updated 5 months ago
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆19Updated this week
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 5 months ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Apr 5, 2025Updated last year
- Evaluating genome assemblies☆119Mar 3, 2026Updated last month
- Mumemto: multi-MUM and MEM finding across pangenomes☆129Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆28Sep 28, 2024Updated last year
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆36May 14, 2025Updated 11 months ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 10 months ago
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 5 years ago
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- Efficient low-divergence mapping of long reads in minimizer space☆69Oct 7, 2023Updated 2 years ago
- ☆18Jan 14, 2026Updated 3 months ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Feb 16, 2026Updated last month
- the pangenome graph evaluator☆29Apr 12, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspri…☆14Nov 20, 2023Updated 2 years ago
- Statistics and analysis for variation graphs☆49Dec 17, 2024Updated last year
- PGR-TK: Pangenome Research Tool Kit☆22Apr 6, 2026Updated last week
- ☆19May 10, 2023Updated 2 years ago
- ☆23Sep 9, 2025Updated 7 months ago
- ☆13Nov 15, 2017Updated 8 years ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 8 months ago
- ☆32Dec 16, 2022Updated 3 years ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆126Mar 20, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Phased structural variant discovery in pangenomes☆41Apr 3, 2026Updated last week
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 8 months ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆18Jan 12, 2026Updated 3 months ago
- implicit pangenome graph☆98Updated this week
- ☆38Oct 6, 2025Updated 6 months ago
- Efficient construction of the BWT using string compression☆22Mar 17, 2026Updated 3 weeks ago