w-gao / pgvLinks
A web-based, interactive pangenome visualization tool
☆21Updated 2 years ago
Alternatives and similar repositories for pgv
Users that are interested in pgv are comparing it to the libraries listed below
Sorting:
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated 8 months ago
- ☆28Updated 8 months ago
- Multiple sequence alignment of long tandem repeats☆16Updated 2 months ago
- ☆19Updated last week
- General purpose utility related to GAF files☆28Updated last week
- ☆24Updated 6 months ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆36Updated 3 months ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆18Updated last week
- ☆23Updated 9 months ago
- convert variation graph alignments to coverage maps over nodes☆24Updated 4 months ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated 10 months ago
- ☆35Updated 2 weeks ago
- the pangenome graph evaluator☆26Updated 4 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 11 months ago
- A Hi-C scaffolding method☆23Updated 3 years ago
- Domain based annotation of transposable elements☆19Updated 3 weeks ago
- ☆17Updated last year
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 7 months ago
- ☆35Updated last year
- Tool for globally phasing diploid assembly graphs with orthogonal data☆40Updated 6 months ago
- Phased structural variant discovery in pangenomes☆34Updated last year
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- plot genome alignment synteny☆21Updated 5 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last week
- Programs implementing the trio-binning genome assembly method☆19Updated last year
- FastK based version of Merqury☆25Updated last week
- Genome alignment and synteny plots☆30Updated 2 years ago
- SV calling for diploid assemblies☆27Updated last year
- Statistics and analysis for variation graphs☆40Updated 5 months ago
- ☆35Updated 2 years ago