w-gao / pgvLinks
A web-based, interactive pangenome visualization tool
☆21Updated 2 years ago
Alternatives and similar repositories for pgv
Users that are interested in pgv are comparing it to the libraries listed below
Sorting:
- ☆28Updated 9 months ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆18Updated last month
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 9 months ago
- the pangenome graph evaluator☆27Updated 4 years ago
- ☆20Updated this week
- General purpose utility related to GAF files☆28Updated last week
- Phased structural variant discovery in pangenomes☆34Updated last year
- TD2☆13Updated last month
- ☆25Updated 10 months ago
- ☆17Updated last year
- ☆24Updated 7 months ago
- Multiple sequence alignment of long tandem repeats☆19Updated 2 weeks ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated 11 months ago
- FastK based version of Merqury☆26Updated last month
- Unzip assembly graphs with Hi-C data and/or long reads.☆28Updated 9 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 2 months ago
- convert variation graph alignments to coverage maps over nodes☆24Updated 3 weeks ago
- recompute GFA link overlaps☆25Updated 2 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last month
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated last month
- Statistics and analysis for variation graphs☆41Updated 7 months ago
- SV calling for diploid assemblies☆28Updated last year
- ☆36Updated last week
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆36Updated 5 months ago
- Differential k-mer analysis☆36Updated last year
- A Hi-C scaffolding method☆23Updated 3 years ago
- Computational Pangenomics☆17Updated 3 years ago
- Targeted genotyper for complex polymorphic genes☆20Updated 2 weeks ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 9 months ago