strange cross-platform, performance-oriented and interactive pangenome and large graph visualization
☆52Jul 24, 2026Updated this week
Alternatives and similar repositories for strangepg
Users that are interested in strangepg are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆35May 23, 2025Updated last year
- Enumerating bubbles in pangenome graphs☆15Jul 15, 2026Updated last week
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆136Updated this week
- General purpose utility related to GAF files☆31May 20, 2026Updated 2 months ago
- ☆31Mar 27, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆13Dec 26, 2025Updated 7 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- pangenome from maximal blocks in an MSA☆11Sep 17, 2024Updated last year
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 10 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40May 4, 2026Updated 2 months ago
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆19Apr 9, 2026Updated 3 months ago
- ☆15Jun 29, 2021Updated 5 years ago
- AlfaPang builds pangenome graphs without alignments or references.☆17Nov 7, 2025Updated 8 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 2 months ago
- Genotyping of copy number sensitive allele-specific haplotypes☆29Jun 18, 2026Updated last month
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 8 months ago
- GFA visualization tool - Rust reimplementation of odgi viz☆15May 2, 2026Updated 2 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆46Oct 13, 2024Updated last year
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year
- Identification of transposable element families from pangenome polymorphisms☆57Jun 8, 2026Updated last month
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆133Jul 15, 2026Updated last week
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 8 months ago
- ☆21Feb 15, 2025Updated last year
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- GFA parser in Rust☆30May 26, 2023Updated 3 years ago
- ☆22Jul 13, 2026Updated last week
- GBWT-based handle graph☆35Jun 17, 2026Updated last month
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 3 years ago
- ☆46Apr 18, 2026Updated 3 months ago
- Targeted genotyper for complex polymorphic genes☆43Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆102Apr 22, 2024Updated 2 years ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆173Jul 1, 2026Updated 3 weeks ago
- Statistics and analysis for variation graphs☆52Dec 17, 2024Updated last year
- Extracts subgraphs or components from a graph in GFA format☆24Nov 18, 2024Updated last year
- Rapid alignment-free method for introgression screening and GWAS using k-mer profiles☆31Apr 22, 2026Updated 3 months ago
- Fast and Optimal Affine-Gap Sequence-to-Graph Alignment☆28Jul 15, 2026Updated last week
- Rust implementation of VG handle graph☆19Dec 18, 2023Updated 2 years ago