strange cross-platform, performance-oriented and interactive pangenome and large graph visualization
☆49May 22, 2026Updated this week
Alternatives and similar repositories for strangepg
Users that are interested in strangepg are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- General purpose utility related to GAF files☆29May 15, 2026Updated last week
- pangenome from maximal blocks in an MSA☆11Sep 17, 2024Updated last year
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆35May 23, 2025Updated last year
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆132Mar 20, 2026Updated 2 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 8 months ago
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆19Apr 9, 2026Updated last month
- ☆31Mar 27, 2024Updated 2 years ago
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- AlfaPang builds pangenome graphs without alignments or references.☆16Nov 7, 2025Updated 6 months ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 6 months ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆131Apr 17, 2026Updated last month
- GFA parser in Rust☆30May 26, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆13Dec 26, 2025Updated 5 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆38May 4, 2026Updated 3 weeks ago
- A toolkit for exploring regions of variation in pangenomes☆14May 19, 2026Updated last week
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 6 months ago
- ☆15Jun 29, 2021Updated 4 years ago
- ☆43Apr 18, 2026Updated last month
- Identification of transposable element families from pangenome polymorphisms☆56Jun 3, 2025Updated 11 months ago
- Variant Calling for the HPRC2☆15Apr 14, 2026Updated last month
- ☆21Feb 15, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ANI based satellite annotation☆26Mar 2, 2026Updated 2 months ago
- ☆23Sep 9, 2025Updated 8 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆46Oct 13, 2024Updated last year
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Feb 16, 2026Updated 3 months ago
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 3 years ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year
- Statistics and analysis for variation graphs☆51Dec 17, 2024Updated last year
- Terminal viewer for pdb files☆22Jan 5, 2026Updated 4 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆162May 1, 2026Updated 3 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Tools for working with agp files☆19Jun 26, 2025Updated 11 months ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 11 months ago
- Pan-genome Seed Index☆20Mar 12, 2025Updated last year
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 9 months ago
- Extracts subgraphs or components from a graph in GFA format☆24Nov 18, 2024Updated last year
- Optimal sequence-to-graph alignment with recombinations☆41Apr 28, 2026Updated 3 weeks ago
- COsine SImilarity-based Genotyper using pangenomes☆35Updated this week