pangenome / smoothxgView external linksLinks
linearize and simplify variation graphs using blocked partial order alignment
☆60Jul 22, 2025Updated 6 months ago
Alternatives and similar repositories for smoothxg
Users that are interested in smoothxg are comparing it to the libraries listed below
Sorting:
- alignment to variation graph inducer☆157Jan 20, 2026Updated 3 weeks ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆234Updated this week
- Long read aligner for cyclic and acyclic pangenome graphs☆40Dec 20, 2023Updated 2 years ago
- GFA visualizer, GPU-accelerated using Vulkan☆75Aug 2, 2022Updated 3 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37May 29, 2025Updated 8 months ago
- base-level dotplots from PAF alignments☆31Sep 18, 2025Updated 4 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆210Jan 30, 2026Updated 2 weeks ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Feb 15, 2021Updated 5 years ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆248Dec 16, 2025Updated last month
- Extracts subgraphs or components from a graph in GFA format☆24Nov 18, 2024Updated last year
- the pangenome graph builder☆478Dec 8, 2025Updated 2 months ago
- extract MSAs from genome variation graphs☆34Sep 20, 2020Updated 5 years ago
- ☆284Dec 29, 2025Updated last month
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆31Aug 18, 2025Updated 5 months ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 4 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50May 22, 2024Updated last year
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated 3 weeks ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 2 years ago
- Pangenome-based genome inference☆155Dec 1, 2025Updated 2 months ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 4 years ago
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆18Feb 2, 2025Updated last year
- Method to optimally select samples for validation and resequencing☆30Apr 6, 2021Updated 4 years ago
- ☆101Apr 22, 2024Updated last year
- Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.☆104Nov 20, 2025Updated 2 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆119Feb 3, 2026Updated last week
- GBWT in Rust☆45Dec 26, 2025Updated last month
- Program for aligning DNA sequences, a pairwise aligner.☆239Jun 16, 2025Updated 7 months ago
- ☆41Feb 1, 2026Updated 2 weeks ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Sep 2, 2025Updated 5 months ago
- An accurate aligner of long reads to a variation graph, based on co-linear chaining