Genotyping of copy number sensitive allele-specific haplotypes
☆27Nov 6, 2025Updated 4 months ago
Alternatives and similar repositories for Ctyper
Users that are interested in Ctyper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- General purpose utility related to GAF files☆29Jan 27, 2026Updated 2 months ago
- COsine SImilarity-based Genotyper using pangenomes☆31Feb 13, 2026Updated last month
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 2 years ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆38Feb 15, 2025Updated last year
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 4 months ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated 2 months ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆36May 14, 2025Updated 10 months ago
- ☆12Jul 4, 2022Updated 3 years ago
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 2 years ago
- Phased structural variant discovery in pangenomes☆40Mar 14, 2026Updated last week
- Targeted genotyper for complex polymorphic genes☆38Updated this week
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 6 months ago
- Multiple sequence alignment of long tandem repeats☆25Jan 9, 2026Updated 2 months ago
- ☆102Apr 22, 2024Updated last year
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Differential quantification of alternative splicing events on spliced pangenome graphs☆15Jan 30, 2026Updated last month
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆122Mar 20, 2026Updated last week
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated last year
- ☆30Mar 27, 2024Updated 2 years ago
- ☆38Dec 29, 2025Updated 2 months ago
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆19Feb 26, 2026Updated last month
- A toolkit for exploring regions of variation in pangenomes☆14Feb 14, 2026Updated last month
- Mumemto: multi-MUM and MEM finding across pangenomes☆129Updated this week
- Differential k-mer analysis☆40Jan 29, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ☆23Sep 9, 2025Updated 6 months ago
- Genome Assembly 102☆17Apr 23, 2025Updated 11 months ago
- Telomere-to-Telomere diploid Indian Genome☆15Mar 5, 2026Updated 3 weeks ago
- Kmer Analysis of Pileups for Genotyping☆37Mar 6, 2026Updated 3 weeks ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- AlfaPang builds pangenome graphs without alignments or references.☆15Nov 7, 2025Updated 4 months ago
- Constructing a pangenome gene graph☆205Aug 11, 2025Updated 7 months ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 4 months ago
- ☆19Feb 15, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ☆38Jan 14, 2026Updated 2 months ago
- ☆67Apr 9, 2024Updated last year
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆27Mar 16, 2026Updated last week
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Sep 21, 2024Updated last year
- ANI based satellite annotation☆26Mar 2, 2026Updated 3 weeks ago
- Easy genomic regions for short-read variant calling☆45Sep 10, 2025Updated 6 months ago
- Pangenome-based genome inference☆163Dec 1, 2025Updated 3 months ago