Alternatives and similar repositories for gafpack

Users that are interested in gafpack are comparing it to the libraries listed below

• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated last week
• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆28Updated last week
• MoinSebi / gfa2bin
  ☆24Updated 6 months ago
• davidebolo1993 / cosigt
  ☆19Updated last week
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆23Updated 6 months ago
• jeizenga / centrolign
  Multiple sequence alignment of long tandem repeats
  ☆16Updated 2 months ago
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 2 years ago
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆40Updated 5 months ago
• rchikhi / 2022-pangenome-graphs-intro
  ☆28Updated 8 months ago
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated last month
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆28Updated 8 months ago
• pangenome / PanSN-spec
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆38Updated 7 months ago
• pangenome / pgge
  the pangenome graph evaluator
  ☆26Updated 4 years ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated 11 months ago
• marbl / rukki
  Extracting paths from assembly graphs
  ☆23Updated last year
• mrvollger / NucFreq
  ☆35Updated last year
• rlorigro / simple-dotplot
  Very simple and configurable all-in-one dotplot program
  ☆13Updated 2 years ago
• pangenome / maffer
  extract MSAs from genome variation graphs
  ☆33Updated 4 years ago
• GTPB / CPANG22
  Computational Pangenomics
  ☆17Updated 3 years ago
• mlin / gfabase
  GFA insert into GenomicSQLite
  ☆49Updated 3 years ago
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆22Updated 9 months ago
• at-cg / RAFT
  ☆23Updated 9 months ago
• tlemane / kmdiff
  Differential k-mer analysis
  ☆36Updated last year
• seryrzu / centroFlye
  An algorithm for centromere assembly using long error-prone reads
  ☆26Updated 4 years ago
• mkirsche / Grafter
  Scaffolding with Ultralong Reads
  ☆15Updated 4 years ago
• pangenome / HPRCyear1v2genbank
  building a human pangenome from the HPRCy1v2 genbank accessioned assemblies
  ☆14Updated 2 years ago
• thegenemyers / MERQURY.FK
  FastK based version of Merqury
  ☆25Updated last week
• maojanlin / biastools
  Reference bias measuring toolkit
  ☆18Updated last month
• cumtr / PG-SCUnK
  PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers
  ☆18Updated last week
• human-pangenomics / hprc-tutorials
  ☆17Updated last year