Alternatives and similar repositories for gafpack

Users that are interested in gafpack are comparing it to the libraries listed below

• MoinSebi / gfa2bin
  ☆25Updated 2 months ago
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆25Updated 11 months ago
• tlemane / kmdiff
  Differential k-mer analysis
  ☆37Updated last year
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆39Updated last year
• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆29Updated last month
• marbl / rukki
  Extracting paths from assembly graphs
  ☆24Updated last year
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated 4 months ago
• jeizenga / centrolign
  Multiple sequence alignment of long tandem repeats
  ☆22Updated 2 months ago
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 3 years ago
• rchikhi / 2022-pangenome-graphs-intro
  ☆28Updated last year
• marbl / training
  Genome Assembly 102
  ☆14Updated 6 months ago
• davidebolo1993 / cosigt
  COsine-based SImilarity Genotyper using pangenomes
  ☆21Updated this week
• ekg / pafplot
  base-level dotplots from PAF alignments
  ☆27Updated last month
• pangenome / pgge
  the pangenome graph evaluator
  ☆29Updated 4 years ago
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆45Updated 10 months ago
• at-cg / minichain
  Long-read aligner to pangenome graphs
  ☆27Updated last year
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated 4 months ago
• AndreaGuarracino / paf2chain
  convert PAF format to CHAIN format
  ☆33Updated 5 months ago
• cumtr / PG-SCUnK
  PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers
  ☆19Updated last month
• mlin / gfabase
  GFA insert into GenomicSQLite
  ☆49Updated 4 years ago
• pangenome / pgvf-spec
  Pangenome Graph Variation Format (PGVF)
  ☆19Updated 5 years ago
• ekg / fastix
  Prefix-renaming FASTA records really fast.
  ☆16Updated last year
• chfi / pafview
  ☆17Updated 8 months ago
• mktle / colorSV
  somatic SV calling on matched tumor-normal co-assembly graphs
  ☆22Updated last year
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆22Updated last year
• bluenote-1577 / devider
  Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs
  ☆31Updated 3 weeks ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆27Updated last year
• w-gao / pgv
  A web-based, interactive pangenome visualization tool
  ☆21Updated 2 years ago
• rlorigro / simple-dotplot
  Very simple and configurable all-in-one dotplot program
  ☆14Updated 2 years ago
• Walfred-MA / Ctyper
  Genotyping of copy number sensitive allele-specific haplotypes
  ☆22Updated last week