Alternatives and similar repositories for gafpack

Users that are interested in gafpack are comparing it to the libraries listed below

• MoinSebi / gfa2bin
  ☆28Updated 5 months ago
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆24Updated last year
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆37Updated 8 months ago
• ekg / pafplot
  base-level dotplots from PAF alignments
  ☆29Updated 4 months ago
• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆29Updated 2 months ago
• marbl / rukki
  Extracting paths from assembly graphs
  ☆24Updated last year
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 3 years ago
• tlemane / kmdiff
  Differential k-mer analysis
  ☆39Updated 2 years ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆40Updated 2 years ago
• chfi / pafview
  ☆18Updated last year
• rchikhi / 2022-pangenome-graphs-intro
  ☆28Updated last year
• at-cg / minichain
  Long-read aligner to pangenome graphs
  ☆29Updated last year
• mlin / gfabase
  GFA insert into GenomicSQLite
  ☆49Updated 4 years ago
• pangenome / pgvf-spec
  Pangenome Graph Variation Format (PGVF)
  ☆19Updated 5 years ago
• pangenome / pgge
  the pangenome graph evaluator
  ☆29Updated 4 years ago
• jeizenga / centrolign
  Multiple sequence alignment of long tandem repeats
  ☆25Updated 3 weeks ago
• AndreaGuarracino / paf2chain
  convert PAF format to CHAIN format
  ☆34Updated 8 months ago
• w-gao / pgv
  A web-based, interactive pangenome visualization tool
  ☆21Updated 2 years ago
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆47Updated last year
• davidebolo1993 / cosigt
  COsine SImilarity-based Genotyper using pangenomes
  ☆25Updated last week
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆31Updated 7 months ago
• rlorigro / simple-dotplot
  Very simple and configurable all-in-one dotplot program
  ☆14Updated 2 years ago
• marbl / training
  Genome Assembly 102
  ☆17Updated 9 months ago
• chfi / gfainject
  ☆17Updated 2 years ago
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆23Updated last year
• pangenome / maffer
  extract MSAs from genome variation graphs
  ☆34Updated 5 years ago
• cumtr / PG-SCUnK
  PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers
  ☆23Updated 2 months ago
• ekg / edyeet
  base-accurate DNA sequence alignments using edlib and mashmap2
  ☆32Updated 4 years ago
• hanzou666 / msa2gfa
  A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg
  ☆11Updated 6 years ago
• lh3 / pubLRasm
  ☆17Updated 5 years ago