☆21Feb 15, 2025Updated last year
Alternatives and similar repositories for KFC
Users that are interested in KFC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Updated this week
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 2 months ago
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated 2 years ago
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 9 months ago
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 11 months ago
- Fast sequence distance estimates☆30Jun 17, 2026Updated 2 weeks ago
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated last year
- Fast and exact gap-affine partial order alignment☆68Apr 25, 2026Updated 2 months ago
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆35May 23, 2025Updated last year
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14May 29, 2026Updated last month
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆134Jun 15, 2026Updated 2 weeks ago
- pangenome from maximal blocks in an MSA☆11Sep 17, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 9 months ago
- ☆13Dec 26, 2025Updated 6 months ago
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆19Apr 9, 2026Updated 2 months ago
- Bitpacked sequence trait and implementation☆18Feb 27, 2026Updated 4 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆44Sep 29, 2025Updated 9 months ago
- A SIMD-accelerated library to compute random minimizers☆45Apr 6, 2026Updated 2 months ago
- A haplotype-resolved and telomere-to-telomere genome assembly pipeline (PHap) tailored for autopolyploids, relying solely on common seque…☆23Jul 29, 2025Updated 11 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆37Apr 23, 2025Updated last year
- ☆23Jun 25, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆12Jun 7, 2024Updated 2 years ago
- bioinformatics toolkit in rust☆107May 14, 2026Updated last month
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 5 months ago
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…☆12Sep 18, 2024Updated last year
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated 2 years ago
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated 5 months ago
- ☆31Mar 27, 2024Updated 2 years ago
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Efficient retrieval, download, and unification of genomic data from leading biodiversity databases☆18Jun 25, 2026Updated last week
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 2 years ago
- A minimap2 implementation with binseq inputs☆18Dec 11, 2025Updated 6 months ago
- Rust binding for WFA2-lib☆10Jun 7, 2022Updated 4 years ago
- Genotyping of copy number sensitive allele-specific haplotypes☆28Jun 18, 2026Updated 2 weeks ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 10 months ago