lrobidou / KFCLinks
☆19Updated 11 months ago
Alternatives and similar repositories for KFC
Users that are interested in KFC are comparing it to the libraries listed below
Sorting:
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Updated last year
- AlfaPang builds pangenome graphs without alignments or references.☆15Updated 3 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆40Updated 2 years ago
- Genome Assembly 102☆17Updated 9 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Updated 6 months ago
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 6 months ago
- Long-read aligner to pangenome graphs☆29Updated last year
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆38Updated 5 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆41Updated 4 months ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆13Updated 4 months ago
- Extracts subgraphs or components from a graph in GFA format☆24Updated last year
- ☆18Updated last year
- De novo clustering of long transcript reads into genes☆19Updated last month
- Better Alignments with Translated HMMER☆24Updated this week
- convert variation graph alignments to coverage maps over nodes☆27Updated 3 weeks ago
- ☆14Updated 2 weeks ago
- JTK -- a regional diploid genome assembler☆25Updated last year
- ☆13Updated last year
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Updated 2 years ago
- base-level dotplots from PAF alignments☆30Updated 4 months ago
- Shared k-mer content between two genomes☆18Updated 2 years ago
- ☆23Updated 5 months ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆24Updated last month
- A k-mer search engine for all Sequence Read Archive public accessions☆36Updated last year
- A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement.☆18Updated this week
- Prefix-renaming FASTA records really fast.☆17Updated last year
- ☆46Updated 2 months ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆29Updated last month
- PGR-TK: Pangenome Research Tool Kit☆21Updated 10 months ago
- ☆13Updated last month