lrobidou / KFC
☆18Updated 2 months ago
Alternatives and similar repositories for KFC:
Users that are interested in KFC are comparing it to the libraries listed below
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated 10 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 7 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆23Updated 5 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆36Updated last year
- Genome Assembly 102☆14Updated 2 weeks ago
- Genotyping of copy number sensitive allele-specific haplotypes☆16Updated 2 months ago
- Prefix-renaming FASTA records really fast.☆17Updated 10 months ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 5 months ago
- Better Alignments with Translated HMMER☆19Updated last week
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12Updated 11 months ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆34Updated 3 months ago
- ☆12Updated 5 months ago
- Wavefront alignment algorithm (WFA) in Golang☆29Updated 6 months ago
- ☆17Updated last year
- A FASTA/FASTQ format parser library☆20Updated last year
- A k-mer search engine for all Sequence Read Archive public accessions☆29Updated 6 months ago
- ☆12Updated 11 months ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆17Updated 6 months ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆22Updated this week
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…☆10Updated 7 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆31Updated this week
- Kmer Analysis of Pileups for Genotyping☆29Updated 3 weeks ago
- ☆20Updated 2 months ago
- ☆17Updated last week
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 2 months ago
- A minimap2 implementation with binseq inputs☆14Updated last week
- Phasing reads with secondary alignments☆18Updated 5 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 10 months ago