Alternatives and similar repositories for KFC

Users that are interested in KFC are comparing it to the libraries listed below

• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆20Updated last year
• AdamCicherski / AlfaPang
  AlfaPang builds pangenome graphs without alignments or references.
  ☆14Updated 2 months ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆40Updated 2 years ago
• marbl / training
  Genome Assembly 102
  ☆17Updated 8 months ago
• chfi / pafview
  ☆18Updated 11 months ago
• bluenote-1577 / devider
  Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs
  ☆39Updated 3 months ago
• refresh-bio / clusty
  ☆14Updated 7 months ago
• at-cg / minichain
  Long-read aligner to pangenome graphs
  ☆29Updated last year
• dubssieg / rs-pancat-compare
  Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.
  ☆12Updated 3 months ago
• lijuzeng / dna2bit
  ☆13Updated last year
• MoinSebi / gfa2bin
  ☆28Updated 5 months ago
• TravisWheelerLab / BATH
  Better Alignments with Translated HMMER
  ☆24Updated this week
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆26Updated last month
• ekg / pafcheck
  PAF (pairwise alignment format) validator based on extended CIGAR strings
  ☆15Updated 5 months ago
• brianli314 / palindrome-finder
  A bioinformatics tool written in Rust to find palindromic sequences in DNA
  ☆38Updated 4 months ago
• ekg / pafplot
  base-level dotplots from PAF alignments
  ☆29Updated 4 months ago
• shenwei356 / wfa
  Wavefront alignment algorithm (WFA) in Golang
  ☆32Updated 5 months ago
• gcgreenberg / LexicHash
  A novel method for sequence similarity estimation
  ☆28Updated last year
• aljpetri / isONclust3
  De novo clustering of long transcript reads into genes
  ☆18Updated last month
• ban-m / jtk
  JTK -- a regional diploid genome assembler
  ☆25Updated last year
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆24Updated last year
• mbhall88 / skc
  Shared k-mer content between two genomes
  ☆18Updated 2 years ago
• AndreaGuarracino / 1000G-ONT-F100-PGGB
  PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium
  ☆12Updated 9 months ago
• ekg / fastix
  Prefix-renaming FASTA records really fast.
  ☆17Updated last year
• kangxiongbin / HyLight
  HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…
  ☆12Updated last year
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year
• AllTheBacteria / Phylign
  Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…
  ☆12Updated last year
• algbio / SRFAligner
  ☆13Updated 3 weeks ago
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆36Updated last week
• cumtr / PG-SCUnK
  PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers
  ☆23Updated last month