lrobidou / KFCLinks
☆19Updated 9 months ago
Alternatives and similar repositories for KFC
Users that are interested in KFC are comparing it to the libraries listed below
Sorting:
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated last year
- AlfaPang builds pangenome graphs without alignments or references.☆13Updated last week
- De novo clustering of long transcript reads into genes☆17Updated 6 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆31Updated last month
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 3 months ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆19Updated this week
- ☆17Updated 9 months ago
- JTK -- a regional diploid genome assembler☆25Updated last year
- Long-read aligner to pangenome graphs☆28Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Updated 3 months ago
- A FASTA/FASTQ format parser library☆20Updated last year
- Shared k-mer content between two genomes☆18Updated 2 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆35Updated last year
- A novel method for sequence similarity estimation☆28Updated last year
- ☆26Updated 3 months ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Updated 2 years ago
- ☆12Updated 11 months ago
- Genotyping of copy number sensitive allele-specific haplotypes☆26Updated 2 weeks ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 2 months ago
- Genome Assembly 102☆14Updated 6 months ago
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆38Updated 3 weeks ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 4 months ago
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…☆12Updated last year
- A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement.☆16Updated this week
- base-level dotplots from PAF alignments☆27Updated 2 months ago
- Better Alignments with Translated HMMER☆23Updated last month
- convert variation graph alignments to coverage maps over nodes☆26Updated 2 weeks ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆12Updated last month
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 6 months ago