apcamargo / prodigal-gv
A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes
☆35Updated last year
Alternatives and similar repositories for prodigal-gv:
Users that are interested in prodigal-gv are comparing it to the libraries listed below
- Unified Human Gut Virome Catalog☆28Updated 8 months ago
- A python library for predicting phage lifestyle based on genome sequence☆36Updated last year
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated last week
- A simple program to classify the lifestyle of phages.☆17Updated last year
- ☆29Updated last month
- Downstream processing of VAMB binning for Viral Elucidation☆48Updated 8 months ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆26Updated 2 weeks ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆44Updated 3 weeks ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated 11 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆33Updated 3 years ago
- A workflow and scripts for large-scale antiSMASH analyses☆39Updated 3 months ago
- ☆31Updated last year
- ☆38Updated 3 months ago
- ☆12Updated 3 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆58Updated last month
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 3 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆38Updated 5 months ago
- Comparisons of multiple different prophage predictions☆25Updated 2 years ago
- VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.☆14Updated last year
- Throughput PhATE processing of draft or finished phage genomes☆14Updated 3 years ago
- Bacterial GWAS analysis☆37Updated 3 weeks ago
- Discover and annotate the virome☆39Updated 5 months ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆58Updated 3 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆20Updated last year
- ☆19Updated 3 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆55Updated 3 weeks ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆23Updated 2 months ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆48Updated 3 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆33Updated last month