apcamargo / prodigal-gvLinks
A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes
☆36Updated last year
Alternatives and similar repositories for prodigal-gv
Users that are interested in prodigal-gv are comparing it to the libraries listed below
Sorting:
- A python library for predicting phage lifestyle based on genome sequence☆38Updated last year
- Unified Human Gut Virome Catalog☆32Updated 11 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated 11 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 2 months ago
- ☆32Updated 4 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆31Updated last week
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆58Updated 2 months ago
- A simple program to classify the lifestyle of phages.☆17Updated 2 years ago
- Binning Virus Genomes from Metagenomes☆65Updated 2 years ago
- A workflow and scripts for large-scale antiSMASH analyses☆41Updated 2 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆42Updated 8 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated last month
- ☆32Updated last year
- PHANOTATE: a gene caller for phages.☆77Updated 6 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 9 months ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆50Updated 3 weeks ago
- Discover and annotate the virome☆43Updated 2 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆35Updated 3 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆69Updated this week
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- ☆23Updated 4 months ago
- ☆38Updated 2 weeks ago
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 4 months ago
- ☆12Updated 3 years ago
- ☆28Updated last year
- Prophage Activity Estimator☆26Updated last year
- ☆54Updated last year