susiegriggo / PhyntenyLinks
Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny
☆57Updated 6 months ago
Alternatives and similar repositories for Phynteny
Users that are interested in Phynteny are comparing it to the libraries listed below
Sorting:
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆70Updated 2 weeks ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆81Updated this week
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆39Updated 2 months ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆35Updated 2 weeks ago
- Unified Human Gut Virome Catalog☆38Updated last month
- PHANOTATE: a gene caller for phages.☆79Updated last year
- More scalable dereplication for metagenome assembled genomes☆74Updated last month
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆94Updated 6 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 4 months ago
- A python library for predicting phage lifestyle based on genome sequence☆37Updated 2 years ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆42Updated 2 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated last month
- ☆80Updated 2 weeks ago
- Downstream processing of VAMB binning for Viral Elucidation☆52Updated last year
- Comparisons of multiple different prophage predictions☆26Updated 3 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆39Updated 3 years ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆61Updated last week
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 8 months ago
- Binning Virus Genomes from Metagenomes☆67Updated 3 years ago
- ☆32Updated 2 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 7 months ago
- BEAV: Bacterial Element Annotation reVamped☆72Updated 3 months ago
- Bacterial GWAS analysis☆46Updated last month
- ☆63Updated last year
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆25Updated this week
- Prophage Activity Estimator☆28Updated last year
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 4 months ago
- ☆24Updated 7 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆42Updated 2 years ago