Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny
☆59Jun 4, 2025Updated 10 months ago
Alternatives and similar repositories for Phynteny
Users that are interested in Phynteny are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Phage Annotation using Protein Structures☆158Apr 10, 2026Updated last week
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆82Dec 4, 2025Updated 4 months ago
- PHANOTATE: a gene caller for phages.☆85Dec 2, 2024Updated last year
- fast phage annotation program☆202Feb 1, 2026Updated 2 months ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆42Feb 26, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Comparisons of multiple different prophage predictions☆26Feb 12, 2026Updated 2 months ago
- Assort phage protein sequences into phamilies using MMseqs2☆12Dec 16, 2024Updated last year
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆38Apr 6, 2026Updated last week
- Detection of phage RBPs based on protein domains and machine learning☆32Feb 5, 2025Updated last year
- Discover and annotate the virome☆61Feb 11, 2026Updated 2 months ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Dec 16, 2024Updated last year
- Phage-Host Interaction Search Tool☆29Jul 8, 2024Updated last year
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆80Apr 16, 2025Updated last year
- Reorients assembled microbial sequences☆136Aug 21, 2025Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Locate antiviral defence systems in prokaryotic genomes☆72Oct 22, 2024Updated last year
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆20Nov 15, 2022Updated 3 years ago
- A simple program to classify the lifestyle of phages.☆17May 22, 2023Updated 2 years ago
- geNomad: Identification of mobile genetic elements☆303Mar 29, 2026Updated 3 weeks ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆50Oct 12, 2023Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated last year
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆72Dec 1, 2025Updated 4 months ago
- Systematic search of all known anti-phage systems.☆152Apr 2, 2026Updated 2 weeks ago
- Virus Identification By iteRative ANnoTation☆192Apr 15, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- viralFlye pipeline☆18Aug 12, 2024Updated last year
- ☆13Feb 29, 2024Updated 2 years ago
- Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)☆55Jan 19, 2024Updated 2 years ago
- Computation of average nucleotide identity with the use of MMseqs2☆16Dec 11, 2024Updated last year
- VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.☆20Oct 19, 2023Updated 2 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆38Dec 20, 2024Updated last year
- ☆38Dec 6, 2023Updated 2 years ago
- A python library for predicting phage lifestyle based on genome sequence☆41Aug 9, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Logan Unitigs and Contigs☆187Apr 1, 2026Updated 2 weeks ago
- Predict prokaryotic host for phage metagenomic sequences☆55Sep 17, 2024Updated last year
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆60Sep 23, 2025Updated 6 months ago
- WtP: Phage identification via nextflow and docker or singularity☆105Mar 19, 2026Updated 3 weeks ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆149Jan 9, 2026Updated 3 months ago
- ☆18May 13, 2021Updated 4 years ago
- viralVerify: viral contig verification tool☆74Feb 19, 2026Updated 2 months ago