mtisza1 / Cenote-Taker2Links
Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)
☆56Updated last year
Alternatives and similar repositories for Cenote-Taker2
Users that are interested in Cenote-Taker2 are comparing it to the libraries listed below
Sorting:
- GraftM - Rapid community profiles from metagenomes☆45Updated 11 months ago
- IS mapping software☆54Updated 3 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- ☆83Updated last year
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆59Updated 5 years ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆71Updated last year
- Estimate metagenomic coverage and sequence diversity☆54Updated 11 months ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- Discover and annotate the virome☆44Updated 2 months ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- Prediction of prophages from bacterial genomes☆78Updated 3 weeks ago
- Horizontal gene transfer (HGT) identification pipeline☆60Updated 2 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 2 months ago
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 9 months ago
- Binning Virus Genomes from Metagenomes☆65Updated 2 years ago
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 5 months ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆74Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆32Updated 2 years ago
- A python library for predicting phage lifestyle based on genome sequence☆38Updated last year
- Split Kmer Analysis☆65Updated 3 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆42Updated 8 months ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆44Updated 2 years ago
- Microbial Populations as Clusters Of Gene Transfer☆44Updated last year
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆47Updated 4 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆74Updated 2 years ago