Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)
☆55Jan 19, 2024Updated 2 years ago
Alternatives and similar repositories for Cenote-Taker2
Users that are interested in Cenote-Taker2 are comparing it to the libraries listed below
Sorting:
- DEPRECATED: Use Cenote-Taker 3 instead☆14Jan 19, 2024Updated 2 years ago
- Discover and annotate the virome☆59Feb 11, 2026Updated 3 weeks ago
- ☆38Dec 6, 2023Updated 2 years ago
- Predict prokaryotic host for phage metagenomic sequences☆55Sep 17, 2024Updated last year
- Comparisons of multiple different prophage predictions☆26Feb 12, 2026Updated 3 weeks ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- ☆18Apr 6, 2022Updated 3 years ago
- Identifying viruses from metagenomic data by deep learning☆150Jun 1, 2025Updated 9 months ago
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated last year
- viralVerify: viral contig verification tool☆74Feb 19, 2026Updated 2 weeks ago
- VAPiD: Viral Annotation and Identification Pipeline☆56May 29, 2024Updated last year
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago
- Virus Protein Family tools☆31Jul 20, 2022Updated 3 years ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Aug 13, 2020Updated 5 years ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆49Feb 26, 2026Updated last week
- a comparative genome browser for bacteriophages☆20Jan 17, 2025Updated last year
- Supporting code for uncultivated gut virus manuscript☆77Jul 17, 2023Updated 2 years ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆58Jun 4, 2025Updated 9 months ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆41Feb 26, 2026Updated last week
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆49Oct 12, 2023Updated 2 years ago
- Step-wise assembly of the neonatal virome modulated by breast feeding.☆11Aug 20, 2021Updated 4 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆54Jul 3, 2024Updated last year
- Phage Annotation using Protein Structures☆152Feb 9, 2026Updated last month
- WtP: Phage identification via nextflow and docker or singularity☆104Feb 25, 2026Updated last week
- Taxonomic classification of viruses at Order and Family level☆21Mar 1, 2023Updated 3 years ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- Virus Identification By iteRative ANnoTation☆188Apr 15, 2024Updated last year
- MARVEL: Metagenomic Analyses and Retrieval of Viral ELements☆51Apr 19, 2024Updated last year
- A python library for predicting phage lifestyle based on genome sequence☆41Aug 9, 2023Updated 2 years ago
- A tool for identifying phages and plasmids from metagenomic fragments using deep learning☆44Apr 13, 2021Updated 4 years ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆79Apr 16, 2025Updated 10 months ago
- PHANOTATE: a gene caller for phages.☆84Dec 2, 2024Updated last year
- ☆26Jun 26, 2025Updated 8 months ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆20Nov 15, 2022Updated 3 years ago
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆81Dec 4, 2025Updated 3 months ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆282Nov 28, 2024Updated last year
- Reconstruction and analysis of viral and host genomes at multi-organ level☆21Jul 3, 2025Updated 8 months ago
- VirHostMatcher-Net: A network-based computational tool for predicting virus-host interactions.☆19Jan 5, 2022Updated 4 years ago
- viralFlye pipeline☆18Aug 12, 2024Updated last year