mtisza1 / Cenote-Taker2Links
Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)
☆56Updated last year
Alternatives and similar repositories for Cenote-Taker2
Users that are interested in Cenote-Taker2 are comparing it to the libraries listed below
Sorting:
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 4 months ago
- Prediction of prophages from bacterial genomes☆81Updated 6 months ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆73Updated 5 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Horizontal gene transfer (HGT) identification pipeline☆64Updated 2 years ago
- Estimate metagenomic coverage and sequence diversity☆57Updated this week
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆47Updated 5 years ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆75Updated last year
- ☆24Updated 7 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 7 months ago
- A toolbox for improving metagenome-assembled genomes.☆62Updated 4 years ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆41Updated 4 years ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆62Updated 6 years ago
- ☆54Updated 5 months ago
- IS mapping software☆57Updated 4 years ago
- a collection of scripts for organising bacterial genomes by species☆81Updated 3 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- GraftM - Rapid community profiles from metagenomes☆47Updated last month
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 3 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆55Updated last month
- Bioinformatics tool to find integrons in bacterial genomes☆82Updated 7 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 4 months ago
- Phigaro is a scalable command-line tool for predicting phages and prophages☆53Updated last year
- Binning Virus Genomes from Metagenomes☆68Updated 3 years ago
- ☆61Updated last year
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆79Updated 2 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 9 months ago
- Repository containing up-to-date definitions and models for the detection of macromolecular systems with MacSyFinder.☆11Updated 6 years ago