bioinf-mcb / MANIACLinks
Computation of average nucleotide identity with the use of MMseqs2
☆15Updated last year
Alternatives and similar repositories for MANIAC
Users that are interested in MANIAC are comparing it to the libraries listed below
Sorting:
- A Hierarchical Approach to Pangenomics Inference☆13Updated last year
- Microbial agile accurate SNP Typer☆29Updated last year
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated 3 months ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated last year
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Updated 2 years ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆22Updated 4 months ago
- viralFlye pipeline☆18Updated last year
- ☆10Updated 6 months ago
- ☆24Updated 10 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆26Updated last month
- Strain-level haplotyping for metagenomes with short or long-reads.☆59Updated 8 months ago
- Finding regions of similarity between plasmids☆16Updated 3 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated last year
- Automated strain separation of low-complexity metagenomes☆53Updated 4 years ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆23Updated last month
- Genome size estimation from long read overlaps☆74Updated last week
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated 4 months ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Updated 5 years ago
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 10 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆24Updated 2 years ago
- Plasmid analysis using rearrangement distances☆48Updated 3 months ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆33Updated last week
- ☆11Updated 5 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- A Swiss-Army-Knife for Bioinformaticians☆13Updated 3 months ago
- tool to determine optimal refrerence genome given a set of fasta files☆15Updated 2 years ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆18Updated 2 years ago
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆34Updated 3 years ago