Alternatives and similar repositories for MANIAC:

Users that are interested in MANIAC are comparing it to the libraries listed below

• lazzarigioele / graphanalyzer
  This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…
  ☆18Updated last year
• raufs / skDER
  skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.
  ☆44Updated 3 weeks ago
• SegataLab / viromeqc
  ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…
  ☆18Updated 2 years ago
• KoslickiLab / YACHT
  A mathematically characterized hypothesis test for organism presence/absence in a metagenome
  ☆30Updated last week
• althonos / pyfastani
  Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
  ☆22Updated 2 weeks ago
• mtisza1 / DNA_methylase_finder
  Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes
  ☆11Updated 9 months ago
• chg60 / DEPhT
  Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences
  ☆20Updated 3 months ago
• zjshi / Maast
  Microbial agile accurate SNP Typer
  ☆29Updated last year
• AfZheng126 / MORA
  MetagenOmic read Re-Assigner and abundance quantifier
  ☆18Updated last month
• althonos / pyorthoani
  A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.
  ☆25Updated 2 weeks ago
• mbhall88 / classification_benchmark
  Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification
  ☆12Updated 11 months ago
• althonos / pyskani
  PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.
  ☆27Updated 2 weeks ago
• mbhall88 / lrge
  Genome size estimation from long read overlaps
  ☆51Updated 3 months ago
• gtonkinhill / tracs
  Fast pairwise transmission inference from single genome and/or metagenomic data
  ☆20Updated 5 months ago
• Dmitry-Antipov / viralFlye
  viralFlye pipeline
  ☆18Updated 7 months ago
• cruizperez / FastAAI
  ☆11Updated last month
• leaemiliepradier / PlasForest
  A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes
  ☆18Updated last year
• kangxiongbin / StrainXpress
  StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…
  ☆13Updated last year
• qiyunlab / binarena
  BinaRena: Interactive Visualization and Binning of Metagenomic Contigs
  ☆31Updated 7 months ago
• Wanli-HE / Plaspline
  ☆15Updated last year
• jaumlrc / ProphET
  ☆10Updated 4 years ago
• NickJD / ORForise
  Comparison pipeline for Prokaryote Protein Coding Gene Predictors
  ☆23Updated 11 months ago
• michaelkyu / MobMess
  ☆19Updated 3 years ago
• HIT-ImmunologyLab / DBSCAN-SWA
  ☆31Updated last year
• bluenote-1577 / floria
  Strain-level haplotyping for metagenomes with short or long-reads.
  ☆50Updated 8 months ago
• erinyoung / roundabout
  Finding regions of similarity between plasmids
  ☆16Updated 2 years ago
• apcamargo / magpurify2
  Identify and remove contaminants from metagenome-assembled genomes
  ☆18Updated last year
• gbouras13 / pypolca
  Standalone Python re-implementation of the POLCA polisher from MaSuRCA
  ☆33Updated last week
• laxeye / zga
  ZGA prokaryotic genome assembly and annotation pipeline
  ☆12Updated 6 months ago
• bacpop / CELEBRIMBOR
  Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs
  ☆23Updated 8 months ago