Computation of average nucleotide identity with the use of MMseqs2
☆24Dec 11, 2024Updated last year
Alternatives and similar repositories for MANIAC
Users that are interested in MANIAC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Jan 28, 2026Updated 7 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆21Jun 24, 2026Updated 2 months ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆111Jul 7, 2026Updated last month
- Taxonomy classification of viral sequences / contigs☆13Jul 15, 2025Updated last year
- A Hierarchical Approach to Pangenomics Inference☆13Apr 15, 2024Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- gemsparcl 💎✨ Rapid and consistent clustering of millions of genomes highlights the diversity of prokaryotic life☆17Jun 16, 2026Updated 2 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆62Updated this week
- Taxonomic Classification of Bacteria and Archaea Genomes☆19Aug 17, 2026Updated 2 weeks ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆25Nov 20, 2025Updated 9 months ago
- Pathogenfinder2☆19Apr 20, 2026Updated 4 months ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆37Aug 21, 2026Updated 2 weeks ago
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated 2 years ago
- Rapid & standardized genome annotation using protein structural information☆75Jul 2, 2026Updated 2 months ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆91Mar 12, 2026Updated 5 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Precise host read removal☆130Apr 13, 2026Updated 4 months ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆39Apr 26, 2026Updated 4 months ago
- Bifrost graph gene caller.☆100Updated this week
- Approximate nearest neighbour search for microbial genomes based on hash metric☆66Jun 10, 2026Updated 2 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆263May 13, 2026Updated 3 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆38Feb 26, 2023Updated 3 years ago
- Fast and space-efficient taxonomic classification of long reads☆46Jul 16, 2026Updated last month
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 8 months ago
- Plasmid analysis using rearrangement distances☆56Jul 19, 2026Updated last month
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆20Jan 13, 2026Updated 7 months ago
- Fast sequence distance estimates☆32Aug 24, 2026Updated last week
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆102Aug 26, 2026Updated last week
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated last year
- Viroid-like circRNA discovery and analysis suite☆20Nov 11, 2023Updated 2 years ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14May 29, 2026Updated 3 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆118Updated this week
- ☆27Jun 20, 2023Updated 3 years ago
- Discover and annotate the virome☆64Jun 10, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- sunburst plots for taxonomy - working to update Krona☆46Sep 22, 2025Updated 11 months ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Fast DNA search and [host] depletion using minimizers☆126Aug 26, 2026Updated last week
- ☆19May 10, 2023Updated 3 years ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆55Jun 10, 2026Updated 2 months ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆167Jul 3, 2026Updated 2 months ago
- ☆13Feb 29, 2024Updated 2 years ago