bioinf-mcb / MANIACLinks
Computation of average nucleotide identity with the use of MMseqs2
☆15Updated 9 months ago
Alternatives and similar repositories for MANIAC
Users that are interested in MANIAC are comparing it to the libraries listed below
Sorting:
- A Hierarchical Approach to Pangenomics Inference☆11Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆52Updated 5 months ago
- Microbial agile accurate SNP Typer☆29Updated last year
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆31Updated 2 weeks ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated last year
- ☆24Updated 7 months ago
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆49Updated last month
- Genome size estimation from long read overlaps☆60Updated 2 weeks ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆18Updated last year
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆26Updated 3 weeks ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆21Updated last month
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆48Updated last week
- Automated strain separation of low-complexity metagenomes☆50Updated 3 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 5 years ago
- ☆10Updated 3 months ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated 2 weeks ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆11Updated 4 years ago
- viralFlye pipeline☆18Updated last year
- tool to determine optimal refrerence genome given a set of fasta files☆15Updated 2 years ago
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 7 months ago
- Finding regions of similarity between plasmids☆16Updated 2 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆25Updated last month
- Colinear block visualisation tool☆31Updated last year
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆14Updated last week
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated last year
- software to identify primers that can distinguish genomes☆20Updated 7 months ago