bioinf-mcb / MANIACLinks
Computation of average nucleotide identity with the use of MMseqs2
☆15Updated 11 months ago
Alternatives and similar repositories for MANIAC
Users that are interested in MANIAC are comparing it to the libraries listed below
Sorting:
- A Hierarchical Approach to Pangenomics Inference☆12Updated last year
- Fast pairwise transmission inference from single genome and/or metagenomic data☆22Updated 3 months ago
- Microbial agile accurate SNP Typer☆29Updated last year
- ☆24Updated 9 months ago
- viralFlye pipeline☆18Updated last year
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated last year
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆33Updated 2 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆56Updated 7 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆26Updated last week
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated 3 months ago
- Finding regions of similarity between plasmids☆16Updated 3 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- Population analysis PIPEline 🛠🧬☆22Updated 6 months ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆23Updated last month
- tool to determine optimal refrerence genome given a set of fasta files☆15Updated 2 years ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Updated last year
- ☆10Updated 5 months ago
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆14Updated 2 months ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated last year
- Automated strain separation of low-complexity metagenomes☆53Updated 4 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- ☆14Updated 4 years ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆14Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Genome size estimation from long read overlaps☆72Updated last week
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 9 months ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Updated 8 months ago
- A Swiss-Army-Knife for Bioinformaticians☆13Updated 2 months ago