cmmr / Marker-MAGuLinks
Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes
☆22Updated 2 years ago
Alternatives and similar repositories for Marker-MAGu
Users that are interested in Marker-MAGu are comparing it to the libraries listed below
Sorting:
- Discover and annotate the virome☆53Updated last week
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated last month
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆42Updated 3 weeks ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- KEGG Module Evaluation Tool☆31Updated last year
- A simple program to classify the lifestyle of phages.☆17Updated 2 years ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆21Updated 10 months ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- ☆33Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆35Updated last month
- Unified Human Gut Virome Catalog☆36Updated last week
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 2 months ago
- Prophage Activity Estimator☆28Updated last year
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆43Updated last year
- ☆38Updated last year
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Updated 10 months ago
- ☆28Updated 9 months ago
- MAG Circularization Method☆32Updated 3 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- A Hierarchical Approach to Pangenomics Inference☆11Updated last year
- Extract metadata from biosamples in NCBI☆16Updated 4 years ago
- MAGScoT - a MAG scoring and refinement tool☆37Updated last year
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆25Updated 3 months ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆24Updated last year
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- Phage-Host Interaction Search Tool☆28Updated last year