fast phage annotation program
☆205Apr 21, 2026Updated 2 weeks ago
Alternatives and similar repositories for pharokka
Users that are interested in pharokka are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Phage Annotation using Protein Structures☆158Apr 27, 2026Updated last week
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆42Updated this week
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆84Dec 4, 2025Updated 5 months ago
- PHANOTATE: a gene caller for phages.☆87Dec 2, 2024Updated last year
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆59Jun 4, 2025Updated 11 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Reorients assembled microbial sequences☆137Aug 21, 2025Updated 8 months ago
- geNomad: Identification of mobile genetic elements☆304Mar 29, 2026Updated last month
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆151Jan 9, 2026Updated 3 months ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆38Dec 20, 2024Updated last year
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆636Feb 18, 2026Updated 2 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated last year
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆72Dec 1, 2025Updated 5 months ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆184Mar 17, 2026Updated last month
- Virus Identification By iteRative ANnoTation☆194Apr 15, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Assort phage protein sequences into phamilies using MMseqs2☆12Dec 16, 2024Updated last year
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆86Jan 24, 2026Updated 3 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆249Oct 12, 2025Updated 6 months ago
- ☆87Apr 28, 2026Updated last week
- Assessing the quality of metagenome-derived genome bins using machine learning☆257Mar 20, 2025Updated last year
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆81Apr 16, 2025Updated last year
- Plasmid analysis using rearrangement distances☆53Updated this week
- Systematic search of all known anti-phage systems.☆160Updated this week
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆87Mar 12, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A tool for generating consensus long-read assemblies for bacterial genomes☆229Apr 27, 2026Updated last week
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆39Apr 20, 2026Updated 2 weeks ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆32Aug 1, 2025Updated 9 months ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆106Jan 22, 2026Updated 3 months ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆289Nov 28, 2024Updated last year
- ☆34Dec 20, 2023Updated 2 years ago
- WtP: Phage identification via nextflow and docker or singularity☆105Mar 19, 2026Updated last month
- Bifrost graph gene caller.☆98Apr 12, 2026Updated 3 weeks ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆332Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Recombination-free trees☆65Apr 26, 2026Updated last week
- A flexible pipeline for complete analysis of bacterial genomes☆509Updated this week
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆106Apr 29, 2026Updated last week
- A tool for generating consensus long-read assemblies for bacterial genomes☆342Sep 11, 2025Updated 7 months ago
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆218Apr 15, 2026Updated 3 weeks ago
- Assemble bacterial isolate genomes from Nanopore reads☆131Jan 22, 2025Updated last year