gbouras13 / pharokka
fast phage annotation program
☆158Updated last month
Alternatives and similar repositories for pharokka:
Users that are interested in pharokka are comparing it to the libraries listed below
- geNomad: Identification of mobile genetic elements☆219Updated last week
- Assessing the quality of metagenome-derived genome bins using machine learning☆197Updated 2 weeks ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆136Updated 5 months ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆91Updated last year
- Pipeline for metabolic annotation of microbial genomes☆143Updated 8 months ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆150Updated last month
- Download files from NCBI Entrez by accession☆119Updated 6 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆213Updated 2 weeks ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆115Updated last year
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆120Updated last month
- customizable pipeline to identify viral sequences from (meta)genomic data