gbouras13 / pharokkaLinks
fast phage annotation program
☆180Updated last week
Alternatives and similar repositories for pharokka
Users that are interested in pharokka are comparing it to the libraries listed below
Sorting:
- Assessing the quality of metagenome-derived genome bins using machine learning☆229Updated 6 months ago
- geNomad: Identification of mobile genetic elements☆260Updated last month
- A tool for generating consensus long-read assemblies for bacterial genomes☆190Updated 3 weeks ago
- ☆145Updated last year
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆99Updated 6 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆141Updated last month
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆156Updated 3 months ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆155Updated 5 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆123Updated last year
- Find endogenous viral elements in genomes☆17Updated 2 weeks ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆254Updated 3 months ago
- Pipeline for metabolic annotation of microbial genomes☆150Updated 6 months ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆206Updated 8 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆220Updated last month
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆97Updated 2 years ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆154Updated 5 months ago
- DDBJ Fast Annotation and Submission Tool☆83Updated last month
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆75Updated last year
- Supporting code for uncultivated gut virus manuscript☆75Updated 2 years ago
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆135Updated 2 years ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆78Updated 9 months ago
- DAS Tool☆158Updated last year
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆71Updated 5 months ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆165Updated last week
- customizable pipeline to identify viral sequences from (meta)genomic data☆267Updated 10 months ago
- snipit: summarise snps relative to your reference sequence☆162Updated 2 weeks ago
- a short-read polishing tool for long-read assemblies☆192Updated 3 weeks ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆221Updated last week
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆143Updated last month
- BSR-Based Allele Calling Algorithm☆148Updated 3 weeks ago