gbouras13 / pharokkaLinks
fast phage annotation program
☆176Updated this week
Alternatives and similar repositories for pharokka
Users that are interested in pharokka are comparing it to the libraries listed below
Sorting:
- geNomad: Identification of mobile genetic elements☆258Updated last week
- Assessing the quality of metagenome-derived genome bins using machine learning☆227Updated 6 months ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆99Updated 5 months ago
- ☆145Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆186Updated this week
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆247Updated 2 months ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆154Updated 5 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆140Updated last month
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆154Updated 3 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆219Updated 3 weeks ago
- Pipeline for metabolic annotation of microbial genomes☆150Updated 6 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆123Updated last year
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆154Updated 4 months ago
- Find endogenous viral elements in genomes☆16Updated 3 months ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆202Updated 7 months ago
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆135Updated last year
- customizable pipeline to identify viral sequences from (meta)genomic data☆266Updated 9 months ago
- BSR-Based Allele Calling Algorithm☆148Updated 2 weeks ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆162Updated this week
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆220Updated 2 months ago
- DAS Tool☆157Updated last year
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆96Updated 2 years ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆71Updated 4 months ago
- ☆114Updated last year
- Identifying viruses from metagenomic data by deep learning☆145Updated 3 months ago
- Bioinformatics tool for Locus Visualisation☆122Updated 4 months ago
- DDBJ Fast Annotation and Submission Tool☆82Updated last week
- Bioinformatics program inStrain☆174Updated 4 months ago
- snipit: summarise snps relative to your reference sequence☆163Updated 4 months ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆171Updated this week