apcamargo / taxopyLinks
A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers
☆52Updated last month
Alternatives and similar repositories for taxopy
Users that are interested in taxopy are comparing it to the libraries listed below
Sorting:
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆95Updated 7 months ago
- PHANOTATE: a gene caller for phages.☆79Updated last year
- ☆81Updated last month
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆57Updated 6 months ago
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 3 years ago
- ☆32Updated 2 months ago
- ☆31Updated last year
- Detection of incorrectly labeled sequences across kingdoms☆87Updated 3 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Updated 3 weeks ago
- Python tool to reduce size and redundancy of phylogenetic datasets