A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers
☆53Jan 23, 2026Updated 2 months ago
Alternatives and similar repositories for taxopy
Users that are interested in taxopy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python bindings for the TaxonKit library☆43Feb 2, 2026Updated last month
- Simple Python interface to CoverM's fast coverage estimation functions☆10Dec 20, 2024Updated last year
- ☆34Oct 6, 2025Updated 5 months ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆179Mar 17, 2026Updated last week
- Unified Human Gut Virome Catalog☆41Nov 10, 2025Updated 4 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- k-mers and the like☆22Mar 2, 2026Updated 3 weeks ago
- Read alignment statistics for metagenomics☆392Mar 16, 2026Updated last week
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆464Mar 20, 2026Updated last week
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆49Oct 12, 2023Updated 2 years ago
- Phage-Host Interaction Search Tool☆29Jul 8, 2024Updated last year
- geNomad: Identification of mobile genetic elements☆296Mar 18, 2026Updated last week
- ☆14Jun 26, 2025Updated 9 months ago
- Python library for identification and masking of low-complexity regions in nucleotide sequences☆10Jan 23, 2026Updated 2 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆54Jul 3, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆298Feb 3, 2026Updated last month
- Systematic search of all known anti-phage systems.☆149Jan 22, 2026Updated 2 months ago
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆27Jul 21, 2025Updated 8 months ago
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆35Sep 20, 2022Updated 3 years ago
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆22Nov 25, 2025Updated 4 months ago
- viralVerify: viral contig verification tool☆74Feb 19, 2026Updated last month
- Metagenomic Binning Algorithm☆51Jan 16, 2026Updated 2 months ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆35Jan 22, 2026Updated 2 months ago
- A Python API and a command-line tool for the Tree of Life☆17Aug 28, 2020Updated 5 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆227Jan 20, 2026Updated 2 months ago
- Locate antiviral defence systems in prokaryotic genomes☆69Oct 22, 2024Updated last year
- Computation of average nucleotide identity with the use of MMseqs2☆16Dec 11, 2024Updated last year
- Plugin that provides pairing functions to the Polars library☆14Feb 14, 2025Updated last year
- Protein structure alignment and search algorithm☆80Updated this week
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated 10 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jan 31, 2025Updated last year
- A sequencing simulator☆220Mar 12, 2026Updated 2 weeks ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆20Nov 15, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 8 months ago
- It discovers linear dependent columns and then replaces linear dependent columns with linearly independent columns that span the space o…☆16Jul 4, 2024Updated last year
- Viroid-like circRNA discovery and analysis suite☆19Nov 11, 2023Updated 2 years ago
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Dec 12, 2024Updated last year
- Download FASTQ files from SRA or ENA repositories.☆377Feb 1, 2026Updated last month
- gia: Genomic Interval Arithmetic☆66Aug 21, 2024Updated last year
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago