apcamargo / taxopyLinks
A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers
☆51Updated 6 months ago
Alternatives and similar repositories for taxopy
Users that are interested in taxopy are comparing it to the libraries listed below
Sorting:
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆87Updated 2 months ago
- PHANOTATE: a gene caller for phages.☆78Updated 8 months ago
- ☆73Updated last week
- Follow up to Grace Blackwell's 661k dataset, for 2023☆109Updated last month
- VirBot: a protein-based RNA virus detector for metagenomic data☆31Updated last year
- Unified Human Gut Virome Catalog☆32Updated last year
- ☆32Updated 5 months ago
- A python library for predicting phage lifestyle based on genome sequence☆38Updated 2 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆65Updated last month
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 3 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆61Updated last week
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆49Updated 2 months ago
- UFCG: Universal Fungal Core Genes☆34Updated last week
- Scalable creating/updating of metagenome profiling databases☆61Updated last month
- ☆30Updated 7 months ago
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆35Updated 6 years ago
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆58Updated 2 months ago
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 10 months ago
- tree visualization for tree + annotation data☆39Updated last month
- A toolkit for prokaryotic comparative genomics☆50Updated 6 months ago
- Precise host read removal☆103Updated last month
- More scalable dereplication for metagenome assembled genomes☆63Updated last week
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 3 years ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆39Updated 9 months ago
- ☆55Updated last year
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 3 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆72Updated last month
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆62Updated 8 months ago
- viralVerify: viral contig verification tool☆71Updated 3 years ago