soedinglab / spacepharerLinks
SpacePHARER CRISPR Spacer Phage-Host pAiRs findER
☆43Updated last year
Alternatives and similar repositories for spacepharer
Users that are interested in spacepharer are comparing it to the libraries listed below
Sorting:
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆70Updated 2 weeks ago
- A toolkit for prokaryotic comparative genomics☆51Updated last month
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 4 months ago
- Unified Human Gut Virome Catalog☆38Updated last month
- A python library for predicting phage lifestyle based on genome sequence☆37Updated 2 years ago
- ☆32Updated 2 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆52Updated last year
- ☆80Updated last week
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆50Updated 3 years ago
- ☆33Updated last year
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆67Updated last week
- Discover and annotate the virome☆54Updated last month
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 7 months ago
- Automatic eukaryotic taxonomic classification☆28Updated 7 months ago
- Prophage Activity Estimator☆28Updated last year
- IslandPath standalone software☆34Updated 2 years ago
- ☆31Updated 11 months ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆39Updated last year
- ☆24Updated 7 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 3 years ago
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 4 months ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆57Updated 6 months ago
- Bacterial GWAS analysis☆46Updated last month
- Classify metagenomic contigs as eukaryotic or prokaryotic☆42Updated 2 years ago
- Predict prokaryotic host for phage metagenomic sequences☆52Updated last year
- ☆61Updated last year
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆81Updated 2 months ago
- PHANOTATE: a gene caller for phages.☆79Updated last year
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆39Updated 2 months ago