soedinglab / spacepharerLinks
SpacePHARER CRISPR Spacer Phage-Host pAiRs findER
☆40Updated last year
Alternatives and similar repositories for spacepharer
Users that are interested in spacepharer are comparing it to the libraries listed below
Sorting:
- A toolkit for prokaryotic comparative genomics☆49Updated 5 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 2 months ago
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 10 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆32Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆42Updated last week
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆50Updated 3 years ago
- A python library for predicting phage lifestyle based on genome sequence☆38Updated last year
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 5 months ago
- ☆56Updated last year
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- Discover and annotate the virome☆44Updated 2 weeks ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- BEAV: Bacterial Element Annotation reVamped☆66Updated 8 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated 2 weeks ago
- ☆72Updated this week
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆59Updated 3 months ago
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- IslandPath standalone software☆33Updated last year
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆59Updated last year
- Prediction of prophages from bacterial genomes☆78Updated last month
- ☆34Updated 2 years ago
- 🦠📇 Microbial genomes-to-report pipeline☆58Updated 3 weeks ago
- Unified Human Gut Virome Catalog☆32Updated 11 months ago
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆20Updated 4 years ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆65Updated last week
- Scalable creating/updating of metagenome profiling databases☆61Updated 3 weeks ago