soedinglab / spacepharerLinks
SpacePHARER CRISPR Spacer Phage-Host pAiRs findER
☆40Updated last year
Alternatives and similar repositories for spacepharer
Users that are interested in spacepharer are comparing it to the libraries listed below
Sorting:
- EzAAI - High Throughput Prokaryotic AAI Calculator☆41Updated 7 months ago
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 8 months ago
- Binning Virus Genomes from Metagenomes☆63Updated 2 years ago
- A python library for predicting phage lifestyle based on genome sequence☆37Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated 11 months ago
- ☆27Updated last year
- ☆32Updated 3 months ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- ☆54Updated last year
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆63Updated 2 months ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆58Updated last month
- A toolkit for prokaryotic comparative genomics☆49Updated 4 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Unified Human Gut Virome Catalog☆31Updated 10 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆53Updated last month
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆48Updated 2 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated last month
- VirBot: a protein-based RNA virus detector for metagenomic data☆30Updated 10 months ago
- ☆71Updated last month
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆36Updated last year
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- whole genome MLST analysis☆43Updated 2 months ago
- Taxonomic classification of viruses at Order and Family level☆20Updated 2 years ago
- IslandPath standalone software☆32Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆64Updated 2 weeks ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆30Updated 2 years ago
- ☆24Updated 6 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year