SpacePHARER CRISPR Spacer Phage-Host pAiRs findER
☆48May 8, 2024Updated 2 years ago
Alternatives and similar repositories for spacepharer
Users that are interested in spacepharer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated 2 years ago
- Phage-Host Interaction Search Tool☆33Sep 10, 2026Updated last month
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆23Dec 16, 2024Updated last year
- Virus Identification By iteRative ANnoTation☆205Apr 15, 2024Updated 2 years ago
- Predict prokaryotic host for phage metagenomic sequences☆57Sep 17, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆34Dec 20, 2023Updated 2 years ago
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆25Nov 25, 2025Updated 10 months ago
- Assort phage protein sequences into phamilies using MMseqs2☆12Dec 16, 2024Updated last year
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆211Sep 22, 2026Updated 2 weeks ago
- From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax☆37Aug 28, 2026Updated last month
- ☆33Jul 27, 2026Updated 2 months ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆15Feb 10, 2022Updated 4 years ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Aug 13, 2020Updated 6 years ago
- Virus Protein Family tools☆31Jul 20, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- sensitive and precise assembly of short sequencing reads☆171Oct 11, 2024Updated last year
- Detection of incorrectly labeled sequences across kingdoms☆88Oct 25, 2022Updated 3 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆48Feb 5, 2026Updated 8 months ago
- PHANOTATE: a gene caller for phages.☆93Dec 2, 2024Updated last year
- Discovery of conserved gene clusters in multiple genomes☆135Sep 30, 2026Updated last week
- Bayesian multiple logistic regression for GWAS meta-analysis☆17Aug 20, 2025Updated last year
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆41Apr 20, 2026Updated 5 months ago
- A python library for predicting phage lifestyle based on genome sequence☆42Aug 9, 2023Updated 3 years ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆61Jun 4, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆18Mar 11, 2024Updated 2 years ago
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆112Sep 15, 2026Updated 3 weeks ago
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆25Dec 20, 2024Updated last year
- A tool for domain based annotation with databases from the Conserved Domains Database☆29May 26, 2026Updated 4 months ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆21Nov 15, 2022Updated 3 years ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆92Dec 27, 2024Updated last year
- Bioinformatics tool for Locus Visualisation☆174Mar 30, 2026Updated 6 months ago
- viralComplete: BLAST-based viral completeness verification☆23Oct 4, 2021Updated 5 years ago
- A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning☆29Nov 20, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Unified Human Gut Virome Catalog☆48May 29, 2026Updated 4 months ago
- Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.☆12Jan 5, 2023Updated 3 years ago
- StrainEst - abundance estimation of strains☆19Jan 17, 2020Updated 6 years ago
- A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences☆105Jul 11, 2023Updated 3 years ago
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- Mining CRISPRs in Environmental Datasets☆128Feb 10, 2023Updated 3 years ago
- Locate antiviral defence systems in prokaryotic genomes☆78Oct 22, 2024Updated last year