Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.
☆248Oct 12, 2025Updated 6 months ago
Alternatives and similar repositories for skani
Users that are interested in skani are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆301Feb 3, 2026Updated 2 months ago
- geNomad: Identification of mobile genetic elements☆303Mar 29, 2026Updated 3 weeks ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆209Sep 22, 2023Updated 2 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆252Mar 20, 2025Updated last year
- Precise host read removal☆119Mar 28, 2026Updated 3 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆181Mar 17, 2026Updated last month
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆622Feb 18, 2026Updated 2 months ago
- Reorients assembled microbial sequences☆136Aug 21, 2025Updated 7 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆55Sep 7, 2025Updated 7 months ago
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆87Mar 12, 2026Updated last month
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 7 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆106Updated this week
- SemiBin: metagenomics binning with self-supervised deep learning☆158Feb 19, 2026Updated 2 months ago
- Read alignment statistics for metagenomics☆396Apr 8, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- alignment-free coverage calculation for metagenomic binning >100 times faster☆50Mar 13, 2025Updated last year
- Rapid comparison and dereplication of genomes☆336Nov 10, 2025Updated 5 months ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆588Apr 10, 2026Updated last week
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆21Dec 12, 2024Updated last year
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆172Apr 6, 2026Updated last week
- Split k-mer analysis – version 2☆105Apr 9, 2026Updated last week
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆185Updated this week
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆22Nov 25, 2025Updated 4 months ago
- Bifrost graph gene caller.☆98Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Follow up to Grace Blackwell's 661k dataset, for 2023☆138Apr 10, 2026Updated last week
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jan 31, 2025Updated last year
- More scalable dereplication for metagenome assembled genomes☆79Mar 8, 2026Updated last month
- Recombination-free trees☆63Sep 1, 2025Updated 7 months ago
- Fast Whole-Genome Similarity (ANI) Estimation☆454Dec 16, 2025Updated 4 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆66Apr 10, 2025Updated last year
- k-mers and the like☆22Apr 6, 2026Updated last week
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆87Mar 12, 2026Updated last month
- A tool for generating consensus long-read assemblies for bacterial genomes☆225Apr 8, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- a short-read polishing tool for long-read assemblies☆212Sep 19, 2025Updated 7 months ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated 9 months ago
- Strain resolver for metagenomics☆80Aug 2, 2024Updated last year
- Phage Annotation using Protein Structures☆158Apr 10, 2026Updated last week
- ☆82Apr 10, 2026Updated last week
- Graph-based assembly phasing☆93Nov 25, 2025Updated 4 months ago
- Variational autoencoder for metagenomic binning☆320Feb 23, 2026Updated last month