Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.
☆256May 13, 2026Updated last month
Alternatives and similar repositories for skani
Users that are interested in skani are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆314Feb 3, 2026Updated 5 months ago
- geNomad: Identification of mobile genetic elements☆319Mar 29, 2026Updated 3 months ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆218Apr 24, 2026Updated 2 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆269Mar 20, 2025Updated last year
- Precise host read removal☆124Apr 13, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆189Mar 17, 2026Updated 3 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆661May 15, 2026Updated last month
- Reorients assembled microbial sequences☆141Jun 30, 2026Updated last week
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆61May 24, 2026Updated last month
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆93May 11, 2026Updated last month
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 10 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆109Updated this week
- Read alignment statistics for metagenomics☆400Jul 2, 2026Updated last week
- SemiBin: metagenomics binning with self-supervised deep learning☆170Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- alignment-free coverage calculation for metagenomic binning >100 times faster☆52May 8, 2026Updated 2 months ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆614May 20, 2026Updated last month
- Rapid comparison and dereplication of genomes☆348Jun 30, 2026Updated last week
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Dec 12, 2024Updated last year
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆180Apr 6, 2026Updated 3 months ago
- Split k-mer analysis – version 2☆105Apr 9, 2026Updated 3 months ago
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆23Nov 25, 2025Updated 7 months ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆191Updated this week
- Bifrost graph gene caller.☆98Jun 18, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Follow up to Grace Blackwell's 661k dataset, for 2023☆144Jun 10, 2026Updated 3 weeks ago
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jun 24, 2026Updated 2 weeks ago
- More scalable dereplication for metagenome assembled genomes☆85Updated this week
- Graph-based assembly phasing☆98Nov 25, 2025Updated 7 months ago
- Phage Annotation using Protein Structures☆167Jul 2, 2026Updated last week
- Recombination-free trees☆72Apr 26, 2026Updated 2 months ago
- Fast Whole-Genome Similarity (ANI) Estimation☆469Dec 16, 2025Updated 6 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆69Apr 10, 2025Updated last year
- k-mers and the like☆23Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆89Mar 12, 2026Updated 3 months ago
- a short-read polishing tool for long-read assemblies☆218Sep 19, 2025Updated 9 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆234Apr 27, 2026Updated 2 months ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated last year
- Strain resolver for metagenomics☆81Aug 2, 2024Updated last year
- Variational autoencoder for metagenomic binning☆330Apr 27, 2026Updated 2 months ago
- A comprehensive prokaryotic genome annotation pipeline☆88Updated this week