Alternatives and similar repositories for PHANOTATE

Users that are interested in PHANOTATE are comparing it to the libraries listed below

• soedinglab / WIsH
  Predict prokaryotic host for phage metagenomic sequences
  ☆52Updated last year
• refresh-bio / vclust
  Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes
  ☆91Updated 5 months ago
• adamhockenberry / bacphlip
  A python library for predicting phage lifestyle based on genome sequence
  ☆37Updated 2 years ago
• susiegriggo / Phynteny
  Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny
  ☆54Updated 4 months ago
• apcamargo / prodigal-gv
  A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes
  ☆38Updated 2 years ago
• snayfach / UHGV
  Unified Human Gut Virome Catalog
  ☆36Updated last week
• kelwyres / Bactabolize
  ☆41Updated 4 months ago
• shandley / awesome-virome
  A listing of software, tools and databases useful for virome analysis
  ☆49Updated this week
• wwood / galah
  More scalable dereplication for metagenome assembled genomes
  ☆71Updated 2 weeks ago
• apcamargo / ictv-mmseqs2-protein-database
  ☆31Updated 3 weeks ago
• AllTheBacteria / AllTheBacteria
  Follow up to Grace Blackwell's 661k dataset, for 2023
  ☆124Updated 2 months ago
• apcamargo / taxopy
  A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers
  ☆50Updated 8 months ago
• RyanCook94 / inphared
  Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.
  ☆74Updated 6 months ago
• gbouras13 / plassembler
  Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates
  ☆78Updated last month
• rhysnewell / Lorikeet
  Strain resolver for metagenomics
  ☆78Updated last year
• Kalan-Lab / lsaBGC
  lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
  ☆38Updated last month
• EBI-Metagenomics / mettannotator
  ☆79Updated this week
• Yasas1994 / Jaeger
  Jaeger is a quick and precise tool for detecting phages in sequence assemblies.
  ☆35Updated last week
• fmenardo / Treemmer
  Python tool to reduce size and redundancy of phylogenetic datasets
  ☆46Updated 2 years ago
• bhattlab / phanta
  Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes
  ☆64Updated last month
• soedinglab / spacepharer
  SpacePHARER CRISPR Spacer Phage-Host pAiRs findER
  ☆43Updated last year
• SWittouck / SCARAP
  A toolkit for prokaryotic comparative genomics
  ☆51Updated last week
• linsalrob / ProphagePredictionComparisons
  Comparisons of multiple different prophage predictions
  ☆26Updated 3 years ago
• bede / hostile
  Precise host read removal
  ☆107Updated last month
• AnantharamanLab / vRhyme
  Binning Virus Genomes from Metagenomes
  ☆66Updated 3 years ago
• HIT-ImmunologyLab / DBSCAN-SWA
  ☆33Updated last year
• metagentools / GraphBin2
  ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs
  ☆37Updated this week
• gem-pasteur / macsyfinder
  MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.
  ☆67Updated 3 weeks ago
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆44Updated 2 months ago
• ku-cbd / PhageBoost
  Rapid discovery of novel prophages using biological feature engineering and machine learning
  ☆36Updated 10 months ago