deprekate / PHANOTATEView external linksLinks
PHANOTATE: a gene caller for phages.
☆82Dec 2, 2024Updated last year
Alternatives and similar repositories for PHANOTATE
Users that are interested in PHANOTATE are comparing it to the libraries listed below
Sorting:
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆59Jun 4, 2025Updated 8 months ago
- fast phage annotation program☆196Feb 1, 2026Updated 2 weeks ago
- Predict prokaryotic host for phage metagenomic sequences☆54Sep 17, 2024Updated last year
- Phage Annotation using Protein Structures☆148Feb 1, 2026Updated 2 weeks ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Dec 20, 2024Updated last year
- ☆33Jul 14, 2021Updated 4 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Dec 1, 2025Updated 2 months ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆20Nov 15, 2022Updated 3 years ago
- multiPhATE with comparative genomics☆18Jun 14, 2021Updated 4 years ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆78Apr 16, 2025Updated 9 months ago
- A python library for predicting phage lifestyle based on genome sequence☆40Aug 9, 2023Updated 2 years ago
- Comparisons of multiple different prophage predictions☆26Updated this week
- ☆17May 26, 2022Updated 3 years ago
- Locate antiviral defence systems in prokaryotic genomes☆67Oct 22, 2024Updated last year
- WtP: Phage identification via nextflow and docker or singularity☆103Feb 2, 2026Updated last week
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆49Oct 12, 2023Updated 2 years ago
- a comparative genome browser for bacteriophages☆20Jan 17, 2025Updated last year
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆81Dec 4, 2025Updated 2 months ago
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆38Mar 25, 2025Updated 10 months ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Dec 16, 2024Updated last year
- viralFlye pipeline☆18Aug 12, 2024Updated last year
- Virus Identification By iteRative ANnoTation☆185Apr 15, 2024Updated last year
- Reorients assembled microbial sequences☆132Aug 21, 2025Updated 5 months ago
- A simple program to classify the lifestyle of phages.☆17May 22, 2023Updated 2 years ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆235Oct 12, 2025Updated 4 months ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆176Jan 7, 2026Updated last month
- geNomad: Identification of mobile genetic elements☆286Nov 10, 2025Updated 3 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆54Jul 3, 2024Updated last year
- Indexing & querying large assembly graphs -- in space, no one can hear you miao!☆118Jan 29, 2026Updated 2 weeks ago
- More scalable dereplication for metagenome assembled genomes☆76Dec 17, 2025Updated last month
- viralVerify: viral contig verification tool☆74Aug 22, 2021Updated 4 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated last year
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆146Dec 17, 2025Updated last month
- Bifrost graph gene caller.☆98Jan 20, 2026Updated 3 weeks ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆606Updated this week
- MARVEL: Metagenomic Analyses and Retrieval of Viral ELements☆51Apr 19, 2024Updated last year
- ☆38Dec 6, 2023Updated 2 years ago
- Split k-mer analysis – version 2☆104Jan 29, 2026Updated 2 weeks ago