Alternatives and similar repositories for PHANOTATE:

Users that are interested in PHANOTATE are comparing it to the libraries listed below

• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆58Updated last week
• apcamargo / prodigal-gv
  A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes
  ☆35Updated last year
• Kalan-Lab / lsaBGC
  lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
  ☆37Updated 2 weeks ago
• adamhockenberry / bacphlip
  A python library for predicting phage lifestyle based on genome sequence
  ☆37Updated last year
• susiegriggo / Phynteny
  Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny
  ☆48Updated 4 months ago
• EBI-Metagenomics / mettannotator
  ☆69Updated last month
• raw-lab / MetaCerberus
  Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…
  ☆56Updated last month
• XiaofangJ / PhaseFinder
  A pipeline to computationally identify invertible DNA regions and quantify their orientations.
  ☆29Updated last year
• apcamargo / taxopy
  A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers
  ☆47Updated 2 months ago
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆39Updated 6 months ago
• refresh-bio / vclust
  Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes
  ☆58Updated 3 months ago
• RasmussenLab / phamb
  Downstream processing of VAMB binning for Viral Elucidation
  ☆49Updated 9 months ago
• SWittouck / SCARAP
  A toolkit for prokaryotic comparative genomics
  ☆47Updated 2 months ago
• kelwyres / Bactabolize
  ☆38Updated last week
• gbouras13 / plassembler
  Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates
  ☆61Updated 3 months ago
• soedinglab / WIsH
  Predict prokaryotic host for phage metagenomic sequences
  ☆52Updated 6 months ago
• cjneely10 / MetaSanity
  Pipeline for major biological analyses.
  ☆34Updated 3 years ago
• apcamargo / ictv-mmseqs2-protein-database
  ☆29Updated last month
• voorloopnul / awesome-phages
  A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.
  ☆48Updated 2 years ago
• snayfach / UHGV
  Unified Human Gut Virome Catalog
  ☆28Updated 8 months ago
• weisberglab / beav
  BEAV: Bacterial Element Annotation reVamped
  ☆64Updated 5 months ago
• AnantharamanLab / vRhyme
  Binning Virus Genomes from Metagenomes
  ☆62Updated 2 years ago
• mtisza1 / Cenote-Taker3
  Discover and annotate the virome
  ☆40Updated this week
• Yasas1994 / Jaeger
  Jaeger is a quick and precise tool for detecting phages in sequence assemblies.
  ☆29Updated this week
• BigDataBiology / argNorm
  ARG normalization by mapping to the ARO ontology.
  ☆39Updated this week
• cultivarium / MicrobeMod
  A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing
  ☆47Updated 2 months ago
• moshi4 / ANIclustermap
  A tool for drawing ANI clustermap between all-vs-all microbial genomes
  ☆76Updated 7 months ago
• zreitz / multismash
  A workflow and scripts for large-scale antiSMASH analyses
  ☆39Updated last week
• nselem / corason
  Bioinformatic Tools for study Evolution of metabolic diversity
  ☆33Updated last year
• BackofenLab / CRISPRidentify
  ☆27Updated 3 months ago