deprekate / PHANOTATELinks
PHANOTATE: a gene caller for phages.
☆80Updated last year
Alternatives and similar repositories for PHANOTATE
Users that are interested in PHANOTATE are comparing it to the libraries listed below
Sorting:
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆57Updated 7 months ago
- A python library for predicting phage lifestyle based on genome sequence☆38Updated 2 years ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆52Updated 2 months ago
- Predict prokaryotic host for phage metagenomic sequences☆52Updated last year
- A listing of software, tools and databases useful for virome analysis☆58Updated this week
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆45Updated 2 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆40Updated 3 months ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆95Updated 7 months ago
- ☆42Updated 7 months ago
- More scalable dereplication for metagenome assembled genomes☆75Updated last month
- ☆33Updated 3 months ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆128Updated 4 months ago
- Unified Human Gut Virome Catalog☆40Updated 2 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆83Updated 2 weeks ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆35Updated last week
- ☆81Updated last month
- Strain resolver for metagenomics☆80Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated 2 weeks ago
- Bifrost graph gene caller.☆97Updated last week
- ☆31Updated last year
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆75Updated 9 months ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Updated last year
- A toolkit for prokaryotic comparative genomics☆51Updated 3 months ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆48Updated 10 months ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆52Updated last month
- Comparisons of multiple different prophage predictions☆26Updated 3 years ago
- ☆45Updated 2 years ago
- 🦠🧬🧑💻📇 Microbial genomes-to-report pipeline☆73Updated 2 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Updated last month
- Python tool to reduce size and redundancy of phylogenetic datasets☆48Updated last month