Alternatives and similar repositories for PHANOTATE

Users that are interested in PHANOTATE are comparing it to the libraries listed below

• susiegriggo / Phynteny
  Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny
  ☆52Updated 4 months ago
• adamhockenberry / bacphlip
  A python library for predicting phage lifestyle based on genome sequence
  ☆37Updated 2 years ago
• soedinglab / WIsH
  Predict prokaryotic host for phage metagenomic sequences
  ☆51Updated last year
• refresh-bio / vclust
  Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes
  ☆89Updated 4 months ago
• apcamargo / prodigal-gv
  A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes
  ☆38Updated last year
• shandley / awesome-virome
  A listing of software, tools and databases useful for virome analysis
  ☆46Updated this week
• apcamargo / taxopy
  A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers
  ☆50Updated 8 months ago
• snayfach / UHGV
  Unified Human Gut Virome Catalog
  ☆36Updated last month
• Kalan-Lab / lsaBGC
  lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
  ☆37Updated last week
• apcamargo / ictv-mmseqs2-protein-database
  ☆31Updated 7 months ago
• Yasas1994 / Jaeger
  Jaeger is a quick and precise tool for detecting phages in sequence assemblies.
  ☆35Updated last week
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆63Updated last week
• RyanCook94 / inphared
  Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.
  ☆72Updated 5 months ago
• wwood / galah
  More scalable dereplication for metagenome assembled genomes
  ☆69Updated 3 weeks ago
• kelwyres / Bactabolize
  ☆41Updated 3 months ago
• zreitz / multismash
  A workflow and scripts for large-scale antiSMASH analyses
  ☆42Updated 6 months ago
• bede / hostile
  Precise host read removal
  ☆104Updated last month
• BigDataBiology / argNorm
  ARG normalization by mapping to the ARO ontology.
  ☆59Updated 2 months ago
• cmkobel / CompareM2
  🦠🧬🧑‍💻📇 Microbial genomes-to-report pipeline
  ☆71Updated last week
• AnantharamanLab / vRhyme
  Binning Virus Genomes from Metagenomes
  ☆65Updated 3 years ago
• AllTheBacteria / AllTheBacteria
  Follow up to Grace Blackwell's 661k dataset, for 2023
  ☆123Updated last month
• EBI-Metagenomics / mettannotator
  ☆76Updated last week
• bluenote-1577 / fairy
  alignment-free coverage calculation for metagenomic binning >100 times faster
  ☆48Updated 6 months ago
• linsalrob / ProphagePredictionComparisons
  Comparisons of multiple different prophage predictions
  ☆26Updated 3 years ago
• raw-lab / MetaCerberus
  Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…
  ☆63Updated 5 months ago
• bacpop / ggCaller
  Bifrost graph gene caller.
  ☆95Updated 2 weeks ago
• SWittouck / SCARAP
  A toolkit for prokaryotic comparative genomics
  ☆51Updated this week
• gbouras13 / plassembler
  Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates
  ☆76Updated last week
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆44Updated 2 months ago
• rhysnewell / Lorikeet
  Strain resolver for metagenomics
  ☆78Updated last year