sensitive and precise assembly of short sequencing reads
☆169Oct 11, 2024Updated last year
Alternatives and similar repositories for plass
Users that are interested in plass are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Variational autoencoder for metagenomic binning☆331Apr 27, 2026Updated 4 months ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆190Mar 17, 2026Updated 5 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆263May 13, 2026Updated 3 months ago
- Detection of incorrectly labeled sequences across kingdoms☆87Oct 25, 2022Updated 3 years ago
- De novo Extraction of Strains from MetAgeNomes☆72Jun 17, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Indexing & querying large assembly graphs -- in space, no one can hear you miao!☆120Jan 29, 2026Updated 7 months ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆210Aug 25, 2025Updated last year
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated last year
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Updated this week
- MMseqs2: ultra fast and sensitive search and clustering suite☆2,132Updated this week
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆270Jul 20, 2026Updated last month
- SKESA assembler☆127Oct 11, 2024Updated last year
- A new high-resolution long-read metagenome assembler for even noisy reads☆166Jul 3, 2026Updated last month
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆182Jul 22, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- SpacePHARER CRISPR Spacer Phage-Host pAiRs findER☆48May 8, 2024Updated 2 years ago
- Read alignment statistics for metagenomics☆405Jul 10, 2026Updated last month
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆235Jul 29, 2026Updated last month
- geNomad: Identification of mobile genetic elements☆328Mar 29, 2026Updated 5 months ago
- MAG Circularization Method☆33Nov 4, 2025Updated 9 months ago
- Aligns short reads using dynamic seed size with strobemers☆203Updated this week
- Toolbox for comparative genomics of MAGs☆92Jul 30, 2026Updated 3 weeks ago
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆86Updated this week
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆670Aug 7, 2026Updated 3 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- strain-level analysis tools☆41Oct 21, 2024Updated last year
- SemiBin: metagenomics binning with self-supervised deep learning☆174Aug 3, 2026Updated 3 weeks ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆60Nov 3, 2023Updated 2 years ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆316Feb 3, 2026Updated 6 months ago
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆124Aug 24, 2023Updated 3 years ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆55Oct 12, 2023Updated 2 years ago
- Discovery of conserved gene clusters in multiple genomes☆135Aug 21, 2026Updated last week
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 5 years ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆195Aug 18, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆32Sep 21, 2023Updated 2 years ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆338Aug 16, 2026Updated last week
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆619May 20, 2026Updated 3 months ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Feb 25, 2023Updated 3 years ago
- Protein Alignment and Detection Interface☆61Apr 1, 2024Updated 2 years ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆220Apr 24, 2026Updated 4 months ago
- PHANOTATE: a gene caller for phages.☆93Dec 2, 2024Updated last year