Alternatives and similar repositories for plass

Users that are interested in plass are comparing it to the libraries listed below

• IndexThePlanet / Logan
  Logan Unitigs and Contigs
  ☆143Updated last week
• steineggerlab / Metabuli
  Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
  ☆144Updated last week
• KatyBrown / CIAlign
  ☆131Updated 11 months ago
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆83Updated 8 months ago
• Russel88 / CRISPRCasTyper
  CCTyper: Automatic detection and subtyping of CRISPR-Cas operons
  ☆102Updated last year
• medema-group / BiG-SCAPE
  Similarity networks of biosynthetic gene clusters
  ☆121Updated last week
• EddyRivasLab / infernal
  RNA secondary structure/sequence profiles for homology search and alignment
  ☆113Updated 9 months ago
• gem-pasteur / macsyfinder
  MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.
  ☆62Updated 8 months ago
• gamcil / cblaster
  Find clustered hits from a BLAST search
  ☆120Updated 8 months ago
• gbouras13 / phold
  Phage Annotation using Protein Structures
  ☆111Updated last month
• EBI-Metagenomics / genomes-catalogue-pipeline
  MGnify genome analysis pipeline
  ☆107Updated last week
• kblin / ncbi-acc-download
  Download files from NCBI Entrez by accession
  ☆127Updated 11 months ago
• mdmparis / defense-finder
  Systematic search of all known anti-phage systems.
  ☆111Updated last month
• soedinglab / spacedust
  Discovery of conserved gene clusters in multiple genomes
  ☆83Updated 2 months ago
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆37Updated 2 months ago
• RyanCook94 / inphared
  Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.
  ☆70Updated 3 months ago
• art-egorov / lovis4u
  Bioinformatics tool for Locus Visualisation
  ☆112Updated 2 months ago
• soedinglab / metaeuk
  MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
  ☆190Updated last year
• linnabrown / run_dbcan
  Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…
  ☆153Updated 3 months ago
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆73Updated 3 years ago
• antismash / antismash
  antiSMASH
  ☆217Updated this week
• althonos / pyrodigal
  Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
  ☆167Updated 2 months ago
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆151Updated last year
• snayfach / MGV
  Supporting code for uncultivated gut virus manuscript
  ☆72Updated 2 years ago
• cultivarium / GenomeSPOT
  Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome
  ☆56Updated 4 months ago
• BigDataBiology / macrel
  Predict AMPs in (meta)genomes and peptides
  ☆83Updated last month
• arvestad / alv
  A console-based alignment viewer
  ☆114Updated last month
• biobakery / graphlan
  High-quality circular representations of taxonomic and phylogenetic trees
  ☆103Updated last year
• glarue / jgi-query
  A simple command-line tool to download data from Joint Genome Institute databases
  ☆52Updated 2 years ago
• cdanielmachado / carveme
  CarveMe: genome-scale metabolic model reconstruction
  ☆175Updated 3 months ago