soedinglab / plassLinks
sensitive and precise assembly of short sequencing reads
☆163Updated last year
Alternatives and similar repositories for plass
Users that are interested in plass are comparing it to the libraries listed below
Sorting:
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆158Updated last month
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆92Updated 4 months ago
- Similarity networks of biosynthetic gene clusters☆146Updated last week
- Logan Unitigs and Contigs☆179Updated 3 months ago
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆106Updated last year
- MGnify genome analysis pipeline☆109Updated last week
- ☆133Updated last year
- Find clustered hits from a BLAST search☆127Updated last month
- Discovery of conserved gene clusters in multiple genomes☆119Updated 7 months ago
- Systematic search of all known anti-phage systems.☆132Updated 2 months ago
- RNA secondary structure/sequence profiles for homology search and alignment☆119Updated last week
- Phage Annotation using Protein Structures☆139Updated 3 weeks ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆70Updated this week
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆176Updated 4 months ago
- Supporting code for uncultivated gut virus manuscript☆77Updated 2 years ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆61Updated 9 months ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆75Updated 8 months ago
- Download files from NCBI Entrez by accession☆132Updated last year
- Bioinformatics tool for Locus Visualisation☆148Updated last month
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆38Updated 6 months ago
- Fast and flexible ORF finder☆76Updated 3 years ago
- A Pure-Python parser of HMMER3 output☆18Updated last year
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆201Updated 4 months ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆155Updated 8 months ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆127Updated 4 months ago
- Predict AMPs in (meta)genomes and peptides☆87Updated last month
- Python package to study microbial communities using metabolic modeling.☆113Updated last week
- A console-based alignment viewer☆117Updated 6 months ago
- A simple command-line tool to download data from Joint Genome Institute databases☆51Updated 2 years ago
- PaperBLAST: find papers about a protein or its homologs☆50Updated 2 weeks ago