sensitive and precise assembly of short sequencing reads
☆167Oct 11, 2024Updated last year
Alternatives and similar repositories for plass
Users that are interested in plass are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Variational autoencoder for metagenomic binning☆328Apr 27, 2026Updated last month
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆189Mar 17, 2026Updated 2 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆253May 13, 2026Updated 3 weeks ago
- De novo Extraction of Strains from MetAgeNomes☆72Jun 17, 2020Updated 5 years ago
- Indexing & querying large assembly graphs -- in space, no one can hear you miao!☆120Jan 29, 2026Updated 4 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Detection of incorrectly labeled sequences across kingdoms☆87Oct 25, 2022Updated 3 years ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆207Aug 25, 2025Updated 9 months ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated 11 months ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Sep 26, 2024Updated last year
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆54Oct 12, 2023Updated 2 years ago
- MMseqs2: ultra fast and sensitive search and clustering suite☆2,072May 29, 2026Updated last week
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆254Apr 15, 2026Updated last month
- geNomad: Identification of mobile genetic elements☆316Mar 29, 2026Updated 2 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆305Feb 3, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- SKESA assembler☆126Oct 11, 2024Updated last year
- SpacePHARER CRISPR Spacer Phage-Host pAiRs findER☆48May 8, 2024Updated 2 years ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆179Apr 6, 2026Updated 2 months ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆230Apr 1, 2026Updated 2 months ago
- Read alignment statistics for metagenomics☆399Apr 8, 2026Updated 2 months ago
- MAG Circularization Method☆33Nov 4, 2025Updated 7 months ago
- Toolbox for comparative genomics of MAGs☆90Apr 28, 2026Updated last month
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆40Apr 20, 2026Updated last month
- Aligns short reads using dynamic seed size with strobemers☆198Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆85Dec 4, 2025Updated 6 months ago
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆23Nov 25, 2025Updated 6 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆646May 15, 2026Updated 3 weeks ago
- strain-level analysis tools☆41Oct 21, 2024Updated last year
- SemiBin: metagenomics binning with self-supervised deep learning☆163Jun 1, 2026Updated last week
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆60Nov 3, 2023Updated 2 years ago
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆124Aug 24, 2023Updated 2 years ago
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 5 years ago
- ☆32Sep 21, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Feb 25, 2023Updated 3 years ago
- Discovery of conserved gene clusters in multiple genomes☆132Jan 16, 2026Updated 4 months ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆602May 20, 2026Updated 2 weeks ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆189Updated this week
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆217Apr 24, 2026Updated last month
- PHANOTATE: a gene caller for phages.☆89Dec 2, 2024Updated last year
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆334Updated this week