Alternatives and similar repositories for pyrodigal:

Users that are interested in pyrodigal are comparing it to the libraries listed below

• robotoD / GenoVi
  GenoVi, an automated customizable circular genome visualizer for bacteria and archaea
  ☆86Updated last year
• medema-group / BiG-SCAPE
  Similarity networks of biosynthetic gene clusters
  ☆94Updated this week
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆114Updated last year
• nigyta / dfast_core
  DDBJ Fast Annotation and Submission Tool
  ☆78Updated last month
• bluenote-1577 / skani
  Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.
  ☆180Updated 6 months ago
• RyanCook94 / inphared
  Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.
  ☆65Updated 3 weeks ago
• gbouras13 / pharokka
  fast phage annotation program
  ☆152Updated last week
• jolespin / veba
  A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…
  ☆82Updated this week
• biobakery / phylophlan
  Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
  ☆132Updated last month
• cruizperez / MicrobeAnnotator
  Pipeline for metabolic annotation of microbial genomes
  ☆142Updated 7 months ago
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆73Updated last year
• kblin / ncbi-acc-download
  Download files from NCBI Entrez by accession
  ☆114Updated 4 months ago
• gem-pasteur / Integron_Finder
  Bioinformatics tool to find integrons in bacterial genomes
  ☆68Updated 7 months ago
• GaetanBenoitDev / metaMDBG
  MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.
  ☆132Updated last month
• gamcil / cblaster
  Find clustered hits from a BLAST search
  ☆108Updated last month
• gbouras13 / hybracter
  Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
  ☆113Updated last week
• gbouras13 / dnaapler
  Reorients assembled microbial sequences
  ☆107Updated 2 weeks ago
• art-egorov / lovis4u
  Bioinformatics tool for Locus Visualisation
  ☆84Updated 2 weeks ago
• mdmparis / defense-finder
  Systematic search of all known anti-phage systems.
  ☆86Updated 2 months ago
• snayfach / MGV
  Supporting code for uncultivated gut virus manuscript
  ☆68Updated last year
• MrOlm / inStrain
  Bioinformatics program inStrain
  ☆157Updated 8 months ago
• CompSynBioLab-KoreaUniv / FunGAP
  FunGAP: fungal Genome Annotation Pipeline
  ☆109Updated last year
• patrickwest / EukRep
  Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets
  ☆69Updated 7 months ago
• KatyBrown / CIAlign
  ☆121Updated 5 months ago
• bjtully / BioData
  All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")
  ☆71Updated last year
• donovan-h-parks / CompareM
  A toolbox for comparative genomics.
  ☆100Updated 3 years ago
• ablab / viralVerify
  viralVerify: viral contig verification tool
  ☆67Updated 3 years ago
• apcamargo / genomad
  geNomad: Identification of mobile genetic elements
  ☆207Updated this week
• bluenote-1577 / sylph
  ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.
  ☆205Updated 3 weeks ago
• chklovski / CheckM2
  Assessing the quality of metagenome-derived genome bins using machine learning
  ☆192Updated 7 months ago