althonos / pyrodigalLinks
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
☆163Updated last month
Alternatives and similar repositories for pyrodigal
Users that are interested in pyrodigal are comparing it to the libraries listed below
Sorting:
- Systematic search of all known anti-phage systems.☆109Updated last month
- Pipeline for metabolic annotation of microbial genomes☆149Updated 3 months ago
- Bioinformatics tool for Locus Visualisation☆111Updated 2 months ago
- Find clustered hits from a BLAST search☆119Updated 7 months ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆141Updated last week
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆95Updated 2 years ago
- Similarity networks of biosynthetic gene clusters☆119Updated last week
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆202Updated last year
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆150Updated last month
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆190Updated last year
- ☆130Updated 10 months ago
- fast phage annotation program☆168Updated 3 weeks ago
- Supporting code for uncultivated gut virus manuscript☆72Updated 2 years ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆153Updated 2 months ago
- viralVerify: viral contig verification tool☆71Updated 3 years ago
- DDBJ Fast Annotation and Submission Tool☆79Updated 2 months ago
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆93Updated 3 weeks ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆62Updated 7 months ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆67Updated 3 months ago
- Download files from NCBI Entrez by accession☆126Updated 10 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆233Updated 2 weeks ago
- MGnify genome analysis pipeline☆108Updated this week
- Bioinformatics tool to find integrons in bacterial genomes☆76Updated 2 months ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆106Updated 3 weeks ago
- Phage Annotation using Protein Structures☆109Updated 2 weeks ago
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆160Updated last month
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆122Updated last year
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆84Updated 2 months ago
- Precise host read removal☆102Updated last month
- Open-source usearch☆114Updated last year