althonos / pyrodigal

Related projects ⓘ

Alternatives and complementary repositories for pyrodigal

• medema-group / BiG-SCAPE
  Similarity networks of biosynthetic gene clusters
  ☆73Updated this week
• nigyta / dfast_core
  DDBJ Fast Annotation and Submission Tool
  ☆78Updated last month
• gamcil / cblaster
  Find clustered hits from a BLAST search
  ☆98Updated 3 months ago
• robotoD / GenoVi
  GenoVi, an automated customizable circular genome visualizer for bacteria and archaea
  ☆84Updated last year
• gbouras13 / phold
  Phage Annotation using Protein Structures
  ☆87Updated last month
• snayfach / MGV
  Supporting code for uncultivated gut virus manuscript
  ☆66Updated last year
• mdmparis / defense-finder
  Systematic search of all known anti-phage systems.
  ☆77Updated 2 weeks ago
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆110Updated last year
• KatyBrown / CIAlign
  ☆117Updated 2 months ago
• art-egorov / lovis4u
  Bioinformatics tool for Locus Visualisation
  ☆74Updated 2 weeks ago
• cruizperez / MicrobeAnnotator
  Pipeline for metabolic annotation of microbial genomes
  ☆140Updated 4 months ago
• kblin / ncbi-acc-download
  Download files from NCBI Entrez by accession
  ☆111Updated 2 months ago
• gem-pasteur / Integron_Finder
  Bioinformatics tool to find integrons in bacterial genomes
  ☆67Updated 5 months ago
• biobakery / phylophlan
  Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
  ☆128Updated this week
• moshi4 / ANIclustermap
  A tool for drawing ANI clustermap between all-vs-all microbial genomes
  ☆67Updated 2 months ago
• bluenote-1577 / skani
  Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.
  ☆170Updated 4 months ago
• deprekate / PHANOTATE
  PHANOTATE: a tool to annotate phage genomes.
  ☆70Updated last month
• RyanCook94 / inphared
  Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.
  ☆61Updated 2 weeks ago
• chklovski / CheckM2
  Assessing the quality of metagenome-derived genome bins using machine learning
  ☆174Updated 5 months ago
• gbouras13 / hybracter
  Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
  ☆108Updated last week
• ablab / viralVerify
  viralVerify: viral contig verification tool
  ☆66Updated 3 years ago
• qiyunzhu / woltka
  Woltka: a versatile meta'omic data classifier
  ☆71Updated last month
• gbouras13 / pharokka
  fast phage annotation program
  ☆148Updated this week
• steineggerlab / Metabuli
  Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
  ☆118Updated last month
• EBI-Metagenomics / genomes-catalogue-pipeline
  MGnify genome analysis pipeline
  ☆101Updated this week
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆72Updated last year
• CompSynBioLab-KoreaUniv / FunGAP
  FunGAP: fungal Genome Annotation Pipeline
  ☆109Updated last year
• soedinglab / metaeuk
  MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
  ☆178Updated 4 months ago
• iquasere / KEGGCharter
  A tool for representing genomic potential and transcriptomic expression into KEGG pathways
  ☆52Updated 3 months ago
• jolespin / veba
  A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…
  ☆77Updated last month