Alternatives and similar repositories for pyrodigal

Users that are interested in pyrodigal are comparing it to the libraries listed below

• art-egorov / lovis4u
  Bioinformatics tool for Locus Visualisation
  ☆107Updated last month
• cruizperez / MicrobeAnnotator
  Pipeline for metabolic annotation of microbial genomes
  ☆149Updated 3 months ago
• robotoD / GenoVi
  GenoVi, an automated customizable circular genome visualizer for bacteria and archaea
  ☆95Updated 2 years ago
• gamcil / cblaster
  Find clustered hits from a BLAST search
  ☆117Updated 6 months ago
• mdmparis / defense-finder
  Systematic search of all known anti-phage systems.
  ☆108Updated last week
• medema-group / BiG-SCAPE
  Similarity networks of biosynthetic gene clusters
  ☆117Updated last week
• nigyta / dfast_core
  DDBJ Fast Annotation and Submission Tool
  ☆79Updated last month
• snayfach / MGV
  Supporting code for uncultivated gut virus manuscript
  ☆72Updated last year
• EBI-Metagenomics / genomes-catalogue-pipeline
  MGnify genome analysis pipeline
  ☆106Updated this week
• steineggerlab / Metabuli
  Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
  ☆140Updated last month
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆121Updated last year
• gbouras13 / dnaapler
  Reorients assembled microbial sequences
  ☆121Updated 3 months ago
• soedinglab / metaeuk
  MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
  ☆190Updated 11 months ago
• gem-pasteur / macsyfinder
  MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.
  ☆62Updated 6 months ago
• DessimozLab / read2tree
  a tool for inferring species tree from sequencing reads
  ☆150Updated 4 months ago
• rrwick / Autocycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆147Updated this week
• KatyBrown / CIAlign
  ☆129Updated 10 months ago
• MrOlm / inStrain
  Bioinformatics program inStrain
  ☆173Updated last month
• bluenote-1577 / skani
  Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.
  ☆201Updated 11 months ago
• bluenote-1577 / sylph
  ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.
  ☆232Updated 3 months ago
• GaetanBenoitDev / metaMDBG
  MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.
  ☆164Updated 2 weeks ago
• gbouras13 / pharokka
  fast phage annotation program
  ☆166Updated last week
• patrickwest / EukRep
  Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets
  ☆71Updated last year
• AllTheBacteria / AllTheBacteria
  Follow up to Grace Blackwell's 661k dataset, for 2023
  ☆106Updated this week
• gbouras13 / hybracter
  Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
  ☆130Updated last month
• ablab / viralVerify
  viralVerify: viral contig verification tool
  ☆69Updated 3 years ago
• chklovski / CheckM2
  Assessing the quality of metagenome-derived genome bins using machine learning
  ☆214Updated 3 months ago
• RyanCook94 / inphared
  Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.
  ☆67Updated 2 months ago
• moshi4 / ANIclustermap
  A tool for drawing ANI clustermap between all-vs-all microbial genomes
  ☆84Updated last month
• jolespin / veba
  A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…
  ☆89Updated 3 weeks ago