Alternatives and similar repositories for sylph:

Users that are interested in sylph are comparing it to the libraries listed below

• chklovski / CheckM2
  Assessing the quality of metagenome-derived genome bins using machine learning
  ☆206Updated last month
• rrwick / Autocycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆125Updated this week
• gbouras13 / hybracter
  Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
  ☆126Updated last month
• MGXlab / CAT_pack
  CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…
  ☆211Updated last week
• gbouras13 / pharokka
  fast phage annotation program
  ☆161Updated 3 months ago
• apcamargo / genomad
  geNomad: Identification of mobile genetic elements
  ☆234Updated last month
• bluenote-1577 / skani
  Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.
  ☆195Updated 9 months ago
• xiezhq / ISEScan
  A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome
  ☆94Updated 3 weeks ago
• phac-nml / mob-suite
  MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
  ☆144Updated 3 weeks ago
• biobakery / phylophlan
  Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
  ☆141Updated last month
• cruizperez / MicrobeAnnotator
  Pipeline for metabolic annotation of microbial genomes
  ☆145Updated last month
• nf-core / taxprofiler
  Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
  ☆145Updated last week
• MrOlm / inStrain
  Bioinformatics program inStrain
  ☆166Updated last month
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆118Updated last year
• klebgenomics / Kleborate
  ☆125Updated 2 months ago
• wwood / singlem
  Novelty-inclusive microbial community profiling of shotgun metagenomes
  ☆142Updated last week
• B-UMMI / chewBBACA
  BSR-Based Allele Calling Algorithm
  ☆142Updated 3 weeks ago
• snayfach / MGV
  Supporting code for uncultivated gut virus manuscript
  ☆71Updated last year
• eead-csic-compbio / get_homologues
  GET_HOMOLOGUES: a versatile software package for pan-genome analysis
  ☆114Updated 2 months ago
• AdmiralenOla / Scoary
  Pan-genome wide association studies
  ☆193Updated 11 months ago
• kblin / ncbi-acc-download
  Download files from NCBI Entrez by accession
  ☆122Updated 8 months ago
• wdecoster / chopper
  ☆186Updated last week
• ncbi / fcs
  Foreign Contamination Screening caller scripts and documentation
  ☆129Updated last month
• AstrobioMike / GToTree
  A user-friendly workflow for phylogenomics
  ☆212Updated 2 weeks ago
• epi2me-labs / wf-metagenomics
  Metagenomic classification of long-read sequencing data
  ☆82Updated 3 weeks ago
• rpetit3 / dragonflye
  Assemble bacterial isolate genomes from Nanopore reads
  ☆125Updated 3 months ago
• tseemann / barrnap
  Bacterial ribosomal RNA predictor
  ☆242Updated last year
• cmks / DAS_Tool
  DAS Tool
  ☆147Updated last year
• nigyta / dfast_core
  DDBJ Fast Annotation and Submission Tool
  ☆80Updated this week
• CSB5 / OPERA-MS
  OPERA-MS - Hybrid Metagenomic Assembler
  ☆94Updated 10 months ago