ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.
☆303Feb 3, 2026Updated 3 months ago
Alternatives and similar repositories for sylph
Users that are interested in sylph are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆250Oct 12, 2025Updated 7 months ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆175Apr 6, 2026Updated last month
- alignment-free coverage calculation for metagenomic binning >100 times faster☆51Updated this week
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆184Mar 17, 2026Updated last month
- Read alignment statistics for metagenomics☆396Apr 8, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A hybrid assembly and MAG recovery pipeline (and more!)☆106Apr 29, 2026Updated last week
- geNomad: Identification of mobile genetic elements☆307Mar 29, 2026Updated last month
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆185Updated this week
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆639Feb 18, 2026Updated 2 months ago
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆219Updated this week
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆56Apr 29, 2026Updated last week
- Split k-mer analysis – version 2☆104Apr 9, 2026Updated last month
- Bioinformatics program inStrain☆185Mar 12, 2026Updated last month
- Variational autoencoder for metagenomic binning☆326Apr 27, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Assessing the quality of metagenome-derived genome bins using machine learning☆259Mar 20, 2025Updated last year
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆213May 4, 2026Updated last week
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆52Mar 26, 2026Updated last month
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 8 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆66Apr 10, 2025Updated last year
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆91Mar 12, 2026Updated last month
- Remove human reads from a sequencing run☆48Apr 27, 2026Updated 2 weeks ago
- Rapid comparison and dereplication of genomes☆339Nov 10, 2025Updated 6 months ago
- Precise host read removal☆122Apr 13, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A new high-resolution long-read metagenome assembler for even noisy reads☆146Apr 5, 2026Updated last month
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆89Updated this week
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆229Apr 1, 2026Updated last month
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆21Dec 12, 2024Updated last year
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆214Apr 24, 2026Updated 2 weeks ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆229Apr 27, 2026Updated 2 weeks ago
- Genome size estimation from long read overlaps☆89May 1, 2026Updated last week
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆332Apr 30, 2026Updated last week
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Apr 30, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆50Updated this week
- Bifrost graph gene caller.☆98Apr 12, 2026Updated 3 weeks ago
- Reorients assembled microbial sequences☆137Aug 21, 2025Updated 8 months ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆75Mar 3, 2026Updated 2 months ago
- Bacterial GWAS analysis☆54Updated this week
- Graph-based assembly phasing☆94Nov 25, 2025Updated 5 months ago
- ☆64Feb 27, 2024Updated 2 years ago