ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.
☆298Feb 3, 2026Updated last month
Alternatives and similar repositories for sylph
Users that are interested in sylph are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆245Oct 12, 2025Updated 5 months ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆171Mar 19, 2026Updated last week
- alignment-free coverage calculation for metagenomic binning >100 times faster☆50Mar 13, 2025Updated last year
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆179Mar 17, 2026Updated last week
- Read alignment statistics for metagenomics☆395Mar 16, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- A hybrid assembly and MAG recovery pipeline (and more!)☆104Jan 27, 2026Updated 2 months ago
- geNomad: Identification of mobile genetic elements☆297Mar 18, 2026Updated last week
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆184Updated this week
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆617Feb 18, 2026Updated last month
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆54Sep 7, 2025Updated 6 months ago
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆217Mar 13, 2026Updated 2 weeks ago
- Bioinformatics program inStrain☆182Mar 12, 2026Updated 2 weeks ago
- Split k-mer analysis – version 2☆104Updated this week
- Variational autoencoder for metagenomic binning☆319Feb 23, 2026Updated last month
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Assessing the quality of metagenome-derived genome bins using machine learning☆252Mar 20, 2025Updated last year
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆212Mar 3, 2026Updated 3 weeks ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆49Mar 2, 2026Updated 3 weeks ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 7 months ago
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆85Mar 12, 2026Updated 2 weeks ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆65Apr 10, 2025Updated 11 months ago
- Remove human reads from a sequencing run☆48Mar 9, 2026Updated 3 weeks ago
- Rapid comparison and dereplication of genomes☆330Nov 10, 2025Updated 4 months ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆124Mar 20, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Precise host read removal☆119Updated this week
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆88Updated this week
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆208Sep 22, 2023Updated 2 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆224Feb 23, 2026Updated last month
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆227Jan 20, 2026Updated 2 months ago
- Genome size estimation from long read overlaps☆81Mar 9, 2026Updated 3 weeks ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Apr 26, 2025Updated 11 months ago
- Bifrost graph gene caller.☆98Jan 20, 2026Updated 2 months ago
- Reorients assembled microbial sequences☆136Aug 21, 2025Updated 7 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆325Mar 18, 2026Updated last week
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆72Mar 3, 2026Updated 3 weeks ago
- Graph-based assembly phasing☆91Nov 25, 2025Updated 4 months ago
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Dec 12, 2024Updated last year
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆81Dec 4, 2025Updated 3 months ago
- ☆63Feb 27, 2024Updated 2 years ago
- genome_updater is a bash script that downloads and updates (non-redundant) snapshots of the NCBI Genomes repository (RefSeq/GenBank) with…☆168Mar 12, 2026Updated 2 weeks ago