ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.
☆311Feb 3, 2026Updated 4 months ago
Alternatives and similar repositories for sylph
Users that are interested in sylph are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆253May 13, 2026Updated last month
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆179Apr 6, 2026Updated 2 months ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆52May 8, 2026Updated last month
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆189Mar 17, 2026Updated 3 months ago
- Read alignment statistics for metagenomics☆398Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A hybrid assembly and MAG recovery pipeline (and more!)☆107Jun 12, 2026Updated last week
- geNomad: Identification of mobile genetic elements☆317Mar 29, 2026Updated 2 months ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆189Updated this week
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆652May 15, 2026Updated last month
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆220Jun 15, 2026Updated last week
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆59May 24, 2026Updated 3 weeks ago
- Split k-mer analysis – version 2☆104Apr 9, 2026Updated 2 months ago
- Bioinformatics program inStrain☆190Mar 12, 2026Updated 3 months ago
- Variational autoencoder for metagenomic binning☆328Apr 27, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Assessing the quality of metagenome-derived genome bins using machine learning☆268Mar 20, 2025Updated last year
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆220May 9, 2026Updated last month
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆53Jun 10, 2026Updated last week
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 10 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆67Apr 10, 2025Updated last year
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆90May 11, 2026Updated last month
- Remove human reads from a sequencing run☆48Jun 8, 2026Updated 2 weeks ago
- Rapid comparison and dereplication of genomes☆347Nov 10, 2025Updated 7 months ago
- Precise host read removal☆124Apr 13, 2026Updated 2 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A new high-resolution long-read metagenome assembler for even noisy reads☆154Jun 11, 2026Updated last week
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆92Jun 3, 2026Updated 2 weeks ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆231Apr 1, 2026Updated 2 months ago
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆21Dec 12, 2024Updated last year
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆216Apr 24, 2026Updated last month
- A tool for generating consensus long-read assemblies for bacterial genomes☆231Apr 27, 2026Updated last month
- Genome size estimation from long read overlaps☆91May 1, 2026Updated last month
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆334Jun 3, 2026Updated 2 weeks ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Jun 4, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆51May 5, 2026Updated last month
- Bifrost graph gene caller.☆98Updated this week
- Reorients assembled microbial sequences☆139Jun 5, 2026Updated 2 weeks ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆76Updated this week
- Bacterial GWAS analysis☆56Jun 12, 2026Updated last week
- Graph-based assembly phasing☆96Nov 25, 2025Updated 6 months ago
- ☆64Feb 27, 2024Updated 2 years ago