ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.
☆301Feb 3, 2026Updated 2 months ago
Alternatives and similar repositories for sylph
Users that are interested in sylph are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆248Oct 12, 2025Updated 6 months ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆172Apr 6, 2026Updated last week
- alignment-free coverage calculation for metagenomic binning >100 times faster☆50Mar 13, 2025Updated last year
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆181Mar 17, 2026Updated last month
- Read alignment statistics for metagenomics☆396Apr 8, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A hybrid assembly and MAG recovery pipeline (and more!)☆106Updated this week
- geNomad: Identification of mobile genetic elements☆303Mar 29, 2026Updated 3 weeks ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆185Updated this week
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆622Feb 18, 2026Updated 2 months ago
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆217Updated this week
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆55Sep 7, 2025Updated 7 months ago
- Split k-mer analysis – version 2☆105Apr 9, 2026Updated last week
- Bioinformatics program inStrain☆184Mar 12, 2026Updated last month
- Variational autoencoder for metagenomic binning☆320Feb 23, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Assessing the quality of metagenome-derived genome bins using machine learning☆253Mar 20, 2025Updated last year
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆212Mar 3, 2026Updated last month
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆50Mar 26, 2026Updated 3 weeks ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 7 months ago
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆87Mar 12, 2026Updated last month
- Strain-level haplotyping for metagenomes with short or long-reads.☆66Apr 10, 2025Updated last year
- Remove human reads from a sequencing run☆48Updated this week
- Rapid comparison and dereplication of genomes☆336Nov 10, 2025Updated 5 months ago
- Precise host read removal☆121Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A new high-resolution long-read metagenome assembler for even noisy reads☆145Apr 5, 2026Updated 2 weeks ago
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆88Apr 2, 2026Updated 2 weeks ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆229Apr 1, 2026Updated 2 weeks ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆209Sep 22, 2023Updated 2 years ago
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆21Dec 12, 2024Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆225Apr 8, 2026Updated last week
- Genome size estimation from long read overlaps☆82Updated this week
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆330Updated this week
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Apr 26, 2025Updated 11 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆50Apr 1, 2026Updated 2 weeks ago
- Bifrost graph gene caller.☆98Apr 12, 2026Updated last week
- Reorients assembled microbial sequences☆136Aug 21, 2025Updated 7 months ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆74Mar 3, 2026Updated last month
- Bacterial GWAS analysis☆47Apr 7, 2026Updated last week
- ☆64Feb 27, 2024Updated 2 years ago
- Graph-based assembly phasing☆93Nov 25, 2025Updated 4 months ago