GEne Cluster prediction with COnditional random fields.
☆82Mar 10, 2026Updated 2 weeks ago
Alternatives and similar repositories for GECCO
Users that are interested in GECCO are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated 2 months ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆97Aug 11, 2025Updated 7 months ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆14Jul 14, 2024Updated last year
- Hydrocarbon biodegradation gene annotation☆19Jul 14, 2022Updated 3 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Mar 9, 2026Updated 2 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆41Sep 28, 2025Updated 6 months ago
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆17Jan 13, 2026Updated 2 months ago
- Metabolic scanning and annotation of Metagenomes☆10Dec 18, 2025Updated 3 months ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆137Mar 19, 2026Updated last week
- Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.☆44Mar 20, 2026Updated last week
- lsaBGC - suite for pan-BGC-omics analysis☆23Nov 21, 2025Updated 4 months ago
- Identifying misassemblies via deep learning☆11May 1, 2024Updated last year
- ☆45Jun 27, 2023Updated 2 years ago
- geNomad: Identification of mobile genetic elements☆296Mar 18, 2026Updated last week
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- BGC Detection and Classification Using Deep Learning☆156Nov 11, 2023Updated 2 years ago
- KEGG Module Evaluation Tool☆33Mar 5, 2026Updated 3 weeks ago
- This is a repository for CAMPER.☆17Mar 18, 2024Updated 2 years ago
- MGnify API toolkit☆19Jan 31, 2025Updated last year
- (Meta-)genome screening for functional and natural product gene sequences☆103Updated this week
- alignment-free coverage calculation for metagenomic binning >100 times faster☆50Mar 13, 2025Updated last year
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 7 months ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆49Oct 12, 2023Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆25Jun 20, 2023Updated 2 years ago
- ☆81Mar 19, 2026Updated last week
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆41Feb 26, 2026Updated last month
- BEAV: Bacterial Element Annotation reVamped☆76Aug 21, 2025Updated 7 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆30Mar 9, 2026Updated 2 weeks ago
- Similarity networks of biosynthetic gene clusters☆157Mar 19, 2026Updated last week
- 📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria☆41Oct 28, 2025Updated 4 months ago
- ☆51Mar 20, 2026Updated last week
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆179Mar 17, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A package to annotate protein sequences☆62Feb 23, 2025Updated last year
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆613Feb 18, 2026Updated last month
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆298Feb 3, 2026Updated last month
- ☆26Jan 30, 2025Updated last year
- ☆53May 5, 2025Updated 10 months ago
- antiSMASH☆247Mar 17, 2026Updated last week
- ☆14Oct 29, 2024Updated last year