althonos / pyrodigal-gvLinks
A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.
☆20Updated 2 months ago
Alternatives and similar repositories for pyrodigal-gv
Users that are interested in pyrodigal-gv are comparing it to the libraries listed below
Sorting:
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆38Updated last month
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Updated 10 months ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆35Updated last week
- A workflow and scripts for large-scale antiSMASH analyses☆44Updated 6 months ago
- ☆17Updated 3 years ago
- ☆31Updated 3 weeks ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆20Updated 2 years ago
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆14Updated last month
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated last year
- ☆24Updated 9 months ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆40Updated 11 months ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆23Updated last month
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆25Updated 3 months ago
- a python package for automated generation of phylogenetic trees from genbank files☆23Updated 7 months ago
- Unified Human Gut Virome Catalog☆37Updated last week
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Updated 10 months ago
- ☆21Updated 3 years ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆26Updated 3 months ago
- ☆16Updated 3 weeks ago
- ☆45Updated 2 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆49Updated 10 months ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆77Updated 4 months ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated 2 months ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆38Updated 2 years ago
- ☆51Updated 5 months ago
- ☆19Updated 2 years ago
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆43Updated 6 months ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆27Updated 6 months ago