althonos / pyrodigal-gvLinks
A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.
☆19Updated last month
Alternatives and similar repositories for pyrodigal-gv
Users that are interested in pyrodigal-gv are comparing it to the libraries listed below
Sorting:
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Updated 9 months ago
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆14Updated last month
- ☆16Updated this week
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆20Updated 2 years ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆38Updated last year
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Updated 9 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆25Updated 2 months ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆35Updated this week
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated last week
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆26Updated last month
- alignment-free coverage calculation for metagenomic binning >100 times faster☆48Updated 6 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆25Updated 2 months ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated last year
- ☆21Updated 3 years ago
- ☆31Updated 7 months ago
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆43Updated 6 months ago
- A simple program to classify the lifestyle of phages.☆17Updated 2 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆48Updated 9 months ago
- Unified Human Gut Virome Catalog☆36Updated last month
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆75Updated 3 months ago
- Phage-Host Interaction Search Tool☆27Updated last year
- a python package for automated generation of phylogenetic trees from genbank files☆23Updated 7 months ago
- ☆24Updated 8 months ago
- ☆17Updated 3 years ago
- strain-level analysis tools☆39Updated 11 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated last week
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Updated 3 weeks ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- Microbial agile accurate SNP Typer☆29Updated last year