althonos / pyrodigal-gv
A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.
☆17Updated 8 months ago
Alternatives and similar repositories for pyrodigal-gv:
Users that are interested in pyrodigal-gv are comparing it to the libraries listed below
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆18Updated 4 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated 2 weeks ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 8 months ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, phage, etc.) relative to the fu…☆11Updated 3 weeks ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated last week
- ☆19Updated 3 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated last year
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆11Updated 5 months ago
- ☆17Updated 2 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 4 months ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆29Updated this week
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆12Updated 5 years ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated last week
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated last week
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆40Updated 4 months ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆19Updated 2 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆34Updated 2 years ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆24Updated 6 months ago
- Unified Human Gut Virome Catalog☆31Updated 9 months ago
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆26Updated last month
- Microbial agile accurate SNP Typer☆29Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆23Updated 9 months ago
- Universal and efficient core gene phylogeny with Foldseek and ProstT5☆55Updated 2 weeks ago
- lsaBGC - suite for pan-BGC-omics analysis☆19Updated this week
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆44Updated this week
- Metabolic scanning and annotation of Metagenomes☆10Updated last month
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆20Updated 4 months ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆13Updated 3 years ago
- Hydrocarbon biodegradation gene annotation☆15Updated 2 years ago