althonos / pyrodigal-gvView external linksLinks
A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.
☆20Nov 25, 2025Updated 2 months ago
Alternatives and similar repositories for pyrodigal-gv
Users that are interested in pyrodigal-gv are comparing it to the libraries listed below
Sorting:
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Dec 12, 2024Updated last year
- Viroid-like circRNA discovery and analysis suite☆18Nov 11, 2023Updated 2 years ago
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆17Jan 13, 2026Updated last month
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆49Oct 12, 2023Updated 2 years ago
- Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.☆12Jan 5, 2023Updated 3 years ago
- Unified Human Gut Virome Catalog☆41Nov 10, 2025Updated 3 months ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆176Jan 7, 2026Updated last month
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated 3 weeks ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆235Oct 12, 2025Updated 4 months ago
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆23Dec 20, 2024Updated last year
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 5 months ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆130Updated this week
- SpacePHARER CRISPR Spacer Phage-Host pAiRs findER☆44May 8, 2024Updated last year
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆35Jan 22, 2026Updated 3 weeks ago
- ☆33Jul 14, 2021Updated 4 years ago
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆53Feb 4, 2026Updated last week
- geNomad: Identification of mobile genetic elements☆286Nov 10, 2025Updated 3 months ago
- Nail is an Alignment Inference tooL☆55Jan 28, 2026Updated 2 weeks ago
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆27Jul 21, 2025Updated 6 months ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Dec 16, 2024Updated last year
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆40Dec 10, 2025Updated 2 months ago
- More scalable dereplication for metagenome assembled genomes☆76Dec 17, 2025Updated last month
- Codon Usage Analysis and Prediction of Gene Expressivity☆23Jan 2, 2019Updated 7 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Feb 5, 2026Updated last week
- ☆14Feb 10, 2025Updated last year
- Phylogenetic tools for Eco-phylogenetics☆14Oct 10, 2024Updated last year
- Protein structure alignment and search algorithm☆79Jan 22, 2026Updated 3 weeks ago
- A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning☆26Nov 20, 2023Updated 2 years ago
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Nov 25, 2025Updated 2 months ago
- ☆52May 5, 2025Updated 9 months ago
- Simple Python interface to CoverM's fast coverage estimation functions☆10Dec 20, 2024Updated last year
- ☆11Sep 16, 2020Updated 5 years ago
- PHANOTATE: a gene caller for phages.☆82Dec 2, 2024Updated last year
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆290Feb 3, 2026Updated last week
- Read alignment statistics for metagenomics☆387Jan 16, 2026Updated 3 weeks ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆87Dec 27, 2024Updated last year
- Efficient and fast querying and parsing of GTDB's data☆29Aug 21, 2025Updated 5 months ago
- GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts☆34Apr 16, 2024Updated last year
- Phage Annotation using Protein Structures☆148Feb 1, 2026Updated 2 weeks ago