Locate antiviral defence systems in prokaryotic genomes
☆78Oct 22, 2024Updated last year
Alternatives and similar repositories for padloc
Users that are interested in padloc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Systematic search of all known anti-phage systems.☆186Sep 1, 2026Updated 3 weeks ago
- Python package to run DefensePredictor, a machine learning model to identify proteins involved in anti-phage defense☆57Apr 27, 2026Updated 5 months ago
- geNomad: Identification of mobile genetic elements☆334Mar 29, 2026Updated 5 months ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆25May 14, 2026Updated 4 months ago
- Phage Annotation using Protein Structures☆175Sep 17, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Mining CRISPRs in Environmental Datasets☆126Feb 10, 2023Updated 3 years ago
- Pharokka is a rapid standardised annotation tool for bacteriophage genomes and metagenomes.☆231Sep 17, 2026Updated last week
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆56Oct 12, 2023Updated 2 years ago
- ☆11Jul 3, 2022Updated 4 years ago
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆25Nov 25, 2025Updated 10 months ago
- Unified Human Gut Virome Catalog☆48May 29, 2026Updated 3 months ago
- PHANOTATE: a gene caller for phages.☆93Dec 2, 2024Updated last year
- Find clustered hits from a BLAST search☆150Aug 6, 2026Updated last month
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆61Jun 4, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated 2 years ago
- Discover and annotate the virome☆64Jun 10, 2026Updated 3 months ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆300Nov 28, 2024Updated last year
- ☆25Feb 7, 2022Updated 4 years ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆111Sep 12, 2026Updated 2 weeks ago
- Discovery of conserved gene clusters in multiple genomes☆135Aug 21, 2026Updated last month
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆59Sep 13, 2026Updated 2 weeks ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆682Aug 7, 2026Updated last month
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆46Jun 1, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆15Feb 10, 2022Updated 4 years ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆25Oct 16, 2024Updated last year
- genotypst: A bioinformatics Typst package for bioinformatics data analysis and visualization☆20Aug 25, 2026Updated last month
- A tool to assemble high-quality phages from metagenomes.☆27Sep 10, 2026Updated 2 weeks ago
- Prediction of prophages from bacterial genomes☆88May 1, 2026Updated 4 months ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆80Dec 22, 2025Updated 9 months ago
- Bifrost graph gene caller.☆101Aug 31, 2026Updated 3 weeks ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆189Mar 17, 2026Updated 6 months ago
- ☆13Feb 29, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆39Dec 20, 2024Updated last year
- Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C…☆13May 28, 2021Updated 5 years ago
- RNA virus analysis toolkit☆23Updated this week
- Small utility script to submit genomes to PHASTER for phage detection☆26Oct 21, 2021Updated 4 years ago
- ☆31Oct 26, 2021Updated 4 years ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆264May 13, 2026Updated 4 months ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆23Dec 16, 2024Updated last year