Locate antiviral defence systems in prokaryotic genomes
☆74Oct 22, 2024Updated last year
Alternatives and similar repositories for padloc
Users that are interested in padloc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Systematic search of all known anti-phage systems.☆170May 5, 2026Updated 3 weeks ago
- ☆11Jul 3, 2022Updated 3 years ago
- PHANOTATE: a gene caller for phages.☆89Dec 2, 2024Updated last year
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆60Jun 4, 2025Updated 11 months ago
- Find clustered hits from a BLAST search☆142Jan 16, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Phage Annotation using Protein Structures☆162May 13, 2026Updated 2 weeks ago
- Unified Human Gut Virome Catalog☆44Nov 10, 2025Updated 6 months ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆43May 5, 2026Updated 3 weeks ago
- ☆23Feb 7, 2022Updated 4 years ago
- geNomad: Identification of mobile genetic elements☆313Mar 29, 2026Updated last month
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆54Oct 12, 2023Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated last year
- ☆13Feb 29, 2024Updated 2 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆39Dec 20, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Small utility script to submit genomes to PHASTER for phage detection☆26Oct 21, 2021Updated 4 years ago
- Bifrost graph gene caller.☆98Apr 12, 2026Updated last month
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Dec 16, 2024Updated last year
- ☆38Dec 6, 2023Updated 2 years ago
- fast phage annotation program☆210Apr 21, 2026Updated last month
- A taxonomic classifier of plasmids☆28Jul 7, 2021Updated 4 years ago
- Mining CRISPRs in Environmental Datasets☆125Feb 10, 2023Updated 3 years ago
- Phigaro is a scalable command-line tool for predicting phages and prophages☆52Jan 8, 2024Updated 2 years ago
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆40Apr 20, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆643May 15, 2026Updated last week
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆27Mar 25, 2023Updated 3 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Mar 8, 2024Updated 2 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆73Dec 1, 2025Updated 5 months ago
- A tool to measure bacteriophages plaque sizes☆18May 12, 2023Updated 3 years ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆23Nov 24, 2025Updated 6 months ago
- Prediction of prophages from bacterial genomes☆86May 1, 2026Updated 3 weeks ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆15Feb 10, 2022Updated 4 years ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆252May 13, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆304Feb 3, 2026Updated 3 months ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆21Nov 15, 2022Updated 3 years ago
- viralFlye pipeline☆19Aug 12, 2024Updated last year
- GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts☆36Apr 16, 2024Updated 2 years ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆25May 14, 2026Updated last week
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆110Oct 20, 2023Updated 2 years ago
- Origin of Chromosomal Replication Assessment. Python tool for the analysis of circular bacterial DNA sequences in order to find their ori…☆18Oct 10, 2025Updated 7 months ago