Locate antiviral defence systems in prokaryotic genomes
☆75Oct 22, 2024Updated last year
Alternatives and similar repositories for padloc
Users that are interested in padloc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Systematic search of all known anti-phage systems.☆178May 5, 2026Updated 2 months ago
- Python package to run DefensePredictor, a machine learning model to identify proteins involved in anti-phage defense☆54Apr 27, 2026Updated 2 months ago
- geNomad: Identification of mobile genetic elements☆325Mar 29, 2026Updated 3 months ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆25May 14, 2026Updated 2 months ago
- Phage Annotation using Protein Structures☆168Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Pharokka is a rapid standardised annotation tool for bacteriophage genomes and metagenomes.☆220Updated this week
- Mining CRISPRs in Environmental Datasets☆124Feb 10, 2023Updated 3 years ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆55Oct 12, 2023Updated 2 years ago
- ☆11Jul 3, 2022Updated 4 years ago
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆23Nov 25, 2025Updated 8 months ago
- Unified Human Gut Virome Catalog☆47May 29, 2026Updated last month
- PHANOTATE: a gene caller for phages.☆92Dec 2, 2024Updated last year
- Find clustered hits from a BLAST search☆145Jan 16, 2026Updated 6 months ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆61Jun 4, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated 2 years ago
- Discover and annotate the virome☆64Jun 10, 2026Updated last month
- customizable pipeline to identify viral sequences from (meta)genomic data☆296Nov 28, 2024Updated last year
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆110Jul 7, 2026Updated 2 weeks ago
- ☆24Feb 7, 2022Updated 4 years ago
- Discovery of conserved gene clusters in multiple genomes☆135Jan 16, 2026Updated 6 months ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆59Jul 17, 2026Updated last week
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆664Jul 10, 2026Updated 2 weeks ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆46Jun 1, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆15Feb 10, 2022Updated 4 years ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆25Oct 16, 2024Updated last year
- genotypst: A bioinformatics Typst package for bioinformatics data analysis and visualization☆19Updated this week
- A tool to assemble high-quality phages from metagenomes.☆22May 22, 2026Updated 2 months ago
- Prediction of prophages from bacterial genomes☆87May 1, 2026Updated 2 months ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆78Dec 22, 2025Updated 7 months ago
- Bifrost graph gene caller.☆98Jun 18, 2026Updated last month
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆189Mar 17, 2026Updated 4 months ago
- ☆13Feb 29, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆39Dec 20, 2024Updated last year
- Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C…☆11May 28, 2021Updated 5 years ago
- RNA virus analysis toolkit☆22Updated this week
- Small utility script to submit genomes to PHASTER for phage detection☆26Oct 21, 2021Updated 4 years ago
- ☆31Oct 26, 2021Updated 4 years ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆259May 13, 2026Updated 2 months ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆23Dec 16, 2024Updated last year