padlocbio / padlocLinks
Locate antiviral defence systems in prokaryotic genomes
☆66Updated last year
Alternatives and similar repositories for padloc
Users that are interested in padloc are comparing it to the libraries listed below
Sorting:
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆41Updated 4 months ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆58Updated 7 months ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆76Updated 9 months ago
- Unified Human Gut Virome Catalog☆41Updated 2 months ago
- ☆43Updated 7 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆39Updated last year
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆32Updated 2 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 3 years ago
- ☆22Updated 3 years ago
- ☆81Updated 2 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆51Updated last year
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆70Updated last month
- A python library for predicting phage lifestyle based on genome sequence☆40Updated 2 years ago
- ☆33Updated 3 months ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆15Updated 4 years ago
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 9 months ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆48Updated 2 years ago
- PHANOTATE: a gene caller for phages.☆81Updated last year
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆83Updated this week
- Prophage Activity Estimator☆30Updated last year
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆24Updated 2 months ago
- Find clustered hits from a BLAST search☆131Updated 2 weeks ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Updated last month
- Pipeline for major biological analyses.☆36Updated 3 years ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆96Updated 8 months ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆64Updated last month
- EzAAI - High Throughput Prokaryotic AAI Calculator☆45Updated 5 months ago
- ☆45Updated 2 years ago
- Python tool to reduce size and redundancy of phylogenetic datasets☆48Updated last month
- ☆50Updated this week