Phage Annotation using Protein Structures
☆156Apr 10, 2026Updated this week
Alternatives and similar repositories for phold
Users that are interested in phold are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆59Jun 4, 2025Updated 10 months ago
- fast phage annotation program☆201Feb 1, 2026Updated 2 months ago
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆82Dec 4, 2025Updated 4 months ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆42Feb 26, 2026Updated last month
- Reorients assembled microbial sequences☆136Aug 21, 2025Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- PHANOTATE: a gene caller for phages.☆85Dec 2, 2024Updated last year
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆80Apr 16, 2025Updated 11 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆148Jan 9, 2026Updated 3 months ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆86Mar 12, 2026Updated last month
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆246Oct 12, 2025Updated 6 months ago
- geNomad: Identification of mobile genetic elements☆301Mar 29, 2026Updated 2 weeks ago
- Detection of phage RBPs based on protein domains and machine learning☆32Feb 5, 2025Updated last year
- BEAV: Bacterial Element Annotation reVamped☆76Aug 21, 2025Updated 7 months ago
- ☆81Updated this week
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated last year
- Locate antiviral defence systems in prokaryotic genomes☆71Oct 22, 2024Updated last year
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆38Updated this week
- Assort phage protein sequences into phamilies using MMseqs2☆12Dec 16, 2024Updated last year
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆86Jan 24, 2026Updated 2 months ago
- ☆38Dec 6, 2023Updated 2 years ago
- WtP: Phage identification via nextflow and docker or singularity☆104Mar 19, 2026Updated 3 weeks ago
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆18Feb 3, 2026Updated 2 months ago
- Plasmid analysis using rearrangement distances☆50Mar 23, 2026Updated 2 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆44Aug 20, 2025Updated 7 months ago
- ☆35Dec 20, 2023Updated 2 years ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆35Jan 22, 2026Updated 2 months ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆38Dec 20, 2024Updated last year
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Dec 1, 2025Updated 4 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆54Sep 7, 2025Updated 7 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆225Mar 31, 2026Updated last week
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- A python library for predicting phage lifestyle based on genome sequence☆41Aug 9, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Discover and annotate the virome☆60Feb 11, 2026Updated 2 months ago
- Binning Virus Genomes from Metagenomes☆72Jul 13, 2022Updated 3 years ago
- Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)☆55Jan 19, 2024Updated 2 years ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆285Nov 28, 2024Updated last year
- Virus Identification By iteRative ANnoTation☆191Apr 15, 2024Updated last year
- Bifrost graph gene caller.☆98Mar 29, 2026Updated 2 weeks ago
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆217Mar 13, 2026Updated 3 weeks ago