Alternatives and similar repositories for phold:

Users that are interested in phold are comparing it to the libraries listed below

• RyanCook94 / inphared
  Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.
  ☆67Updated 2 weeks ago
• steineggerlab / Metabuli
  Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
  ☆134Updated 2 weeks ago
• medema-group / BiG-SCAPE
  Similarity networks of biosynthetic gene clusters
  ☆110Updated this week
• art-egorov / lovis4u
  Bioinformatics tool for Locus Visualisation
  ☆102Updated last month
• gem-pasteur / macsyfinder
  MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.
  ☆61Updated 4 months ago
• gbouras13 / pharokka
  fast phage annotation program
  ☆161Updated 3 months ago
• mdmparis / defense-finder
  Systematic search of all known anti-phage systems.
  ☆97Updated 3 months ago
• KennthShang / PhaBOX
  Local version of the virus identification and analysis web server (tool set)
  ☆49Updated 3 weeks ago
• robotoD / GenoVi
  GenoVi, an automated customizable circular genome visualizer for bacteria and archaea
  ☆92Updated last year
• gamcil / cblaster
  Find clustered hits from a BLAST search
  ☆112Updated 5 months ago
• cultivarium / GenomeSPOT
  Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome
  ☆48Updated last month
• IndexThePlanet / Logan
  Logan Unitigs and Contigs
  ☆127Updated 3 weeks ago
• KatyBrown / CIAlign
  ☆127Updated 8 months ago
• AllTheBacteria / AllTheBacteria
  Follow up to Grace Blackwell's 661k dataset, for 2023
  ☆101Updated 2 weeks ago
• JustineCharon / RdRp-scan
  Exploring the "dusk matter" of the RNA virosphere
  ☆35Updated 3 years ago
• moshi4 / ANIclustermap
  A tool for drawing ANI clustermap between all-vs-all microbial genomes
  ☆78Updated this week
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆80Updated 5 months ago
• EBI-Metagenomics / mettannotator
  ☆70Updated this week
• deprekate / PHANOTATE
  PHANOTATE: a gene caller for phages.
  ☆74Updated 5 months ago
• iquasere / KEGGCharter
  A tool for representing genomic potential and transcriptomic expression into KEGG pathways
  ☆54Updated 9 months ago
• moshi4 / COGclassifier
  A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
  ☆64Updated this week
• EBI-Metagenomics / genomes-catalogue-pipeline
  MGnify genome analysis pipeline
  ☆106Updated this week
• Russel88 / CRISPRCasTyper
  CCTyper: Automatic detection and subtyping of CRISPR-Cas operons
  ☆101Updated last year
• cultivarium / MicrobeMod
  A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing
  ☆47Updated 3 months ago
• apcamargo / genomad
  geNomad: Identification of mobile genetic elements
  ☆232Updated last month
• susiegriggo / Phynteny
  Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny
  ☆48Updated 4 months ago
• cruizperez / MicrobeAnnotator
  Pipeline for metabolic annotation of microbial genomes
  ☆145Updated last month
• jolespin / veba
  A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…
  ☆84Updated last week
• dimiboeckaerts / PhageRBPdetection
  Detection of phage RBPs based on protein domains and machine learning
  ☆23Updated 3 months ago
• soedinglab / plass
  sensitive and precise assembly of short sequencing reads
  ☆155Updated 6 months ago