Phage Annotation using Protein Structures
☆165Jun 6, 2026Updated this week
Alternatives and similar repositories for phold
Users that are interested in phold are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆61Jun 4, 2025Updated last year
- fast phage annotation program☆211Jun 4, 2026Updated last week
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆85Dec 4, 2025Updated 6 months ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆45Jun 1, 2026Updated last week
- Reorients assembled microbial sequences☆137Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- PHANOTATE: a gene caller for phages.☆90Dec 2, 2024Updated last year
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆253May 13, 2026Updated 3 weeks ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆82Apr 16, 2025Updated last year
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆151Jun 1, 2026Updated last week
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆88Mar 12, 2026Updated 2 months ago
- geNomad: Identification of mobile genetic elements☆316Mar 29, 2026Updated 2 months ago
- Detection of phage RBPs based on protein domains and machine learning☆33Feb 5, 2025Updated last year
- BEAV: Bacterial Element Annotation reVamped☆77Aug 21, 2025Updated 9 months ago
- A comprehensive prokaryotic genome annotation pipeline☆87Jun 3, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated last year
- Locate antiviral defence systems in prokaryotic genomes☆74Oct 22, 2024Updated last year
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆40Apr 20, 2026Updated last month
- Assort phage protein sequences into phamilies using MMseqs2☆12Dec 16, 2024Updated last year
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆86Jan 24, 2026Updated 4 months ago
- ☆37Dec 6, 2023Updated 2 years ago
- WtP: Phage identification via nextflow and docker or singularity☆107Mar 19, 2026Updated 2 months ago
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆19May 28, 2026Updated 2 weeks ago
- Plasmid analysis using rearrangement distances☆55May 28, 2026Updated 2 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆34Dec 20, 2023Updated 2 years ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆46Aug 20, 2025Updated 9 months ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆37Updated this week
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆39Dec 20, 2024Updated last year
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆74Dec 1, 2025Updated 6 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆57May 24, 2026Updated 2 weeks ago
- A python library for predicting phage lifestyle based on genome sequence☆41Aug 9, 2023Updated 2 years ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆231Apr 27, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Discover and annotate the virome☆63Feb 11, 2026Updated 4 months ago
- Binning Virus Genomes from Metagenomes☆75Jul 13, 2022Updated 3 years ago
- Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)☆56Jan 19, 2024Updated 2 years ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆291Nov 28, 2024Updated last year
- Bifrost graph gene caller.☆98Apr 12, 2026Updated last month
- Virus Identification By iteRative ANnoTation☆196Apr 15, 2024Updated 2 years ago
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆220Updated this week