gbouras13 / pholdLinks
Phage Annotation using Protein Structures
☆139Updated 3 weeks ago
Alternatives and similar repositories for phold
Users that are interested in phold are comparing it to the libraries listed below
Sorting:
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆158Updated last month
- Systematic search of all known anti-phage systems.☆132Updated 2 months ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆75Updated 8 months ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆70Updated last week
- Find clustered hits from a BLAST search☆128Updated last month
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆92Updated 4 months ago
- Similarity networks of biosynthetic gene clusters☆146Updated last week
- Bioinformatics tool for Locus Visualisation☆151Updated 2 months ago
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆106Updated last year
- Follow up to Grace Blackwell's 661k dataset, for 2023☆127Updated 4 months ago
- Discovery of conserved gene clusters in multiple genomes☆119Updated 7 months ago
- Viral protein family functional prediction using protein language models☆21Updated 2 weeks ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆61Updated 9 months ago
- Logan Unitigs and Contigs☆179Updated 3 months ago
- ☆133Updated last year
- Bioinformatic Tools for study Evolution of metabolic diversity☆38Updated last year
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆176Updated 4 months ago
- sensitive and precise assembly of short sequencing reads☆163Updated last year
- MGnify genome analysis pipeline☆109Updated this week
- This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and…☆23Updated 3 weeks ago
- Supporting code for uncultivated gut virus manuscript☆77Updated 2 years ago
- ☆21Updated 5 months ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆100Updated 2 years ago
- PHANOTATE: a gene caller for phages.☆79Updated last year
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆95Updated 7 months ago
- Locate antiviral defence systems in prokaryotic genomes☆64Updated last year
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆98Updated 2 months ago
- Detection of phage RBPs based on protein domains and machine learning☆28Updated 10 months ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆155Updated 8 months ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆31Updated last year