Alternatives and similar repositories for spacedust

Users that are interested in spacedust are comparing it to the libraries listed below

• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆88Updated 3 months ago
• cultivarium / GenomeSPOT
  Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome
  ☆58Updated 7 months ago
• gbouras13 / phold
  Phage Annotation using Protein Structures
  ☆134Updated last week
• gem-pasteur / macsyfinder
  MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.
  ☆69Updated last month
• steineggerlab / Metabuli
  Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
  ☆157Updated 3 weeks ago
• RyanCook94 / inphared
  Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.
  ☆74Updated 7 months ago
• soedinglab / plass
  sensitive and precise assembly of short sequencing reads
  ☆161Updated last year
• mdmparis / defense-finder
  Systematic search of all known anti-phage systems.
  ☆125Updated last month
• steineggerlab / unicore
  Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5
  ☆77Updated 4 months ago
• gamcil / synthaser
  Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases
  ☆23Updated 3 years ago
• Russel88 / CRISPRCasTyper
  CCTyper: Automatic detection and subtyping of CRISPR-Cas operons
  ☆102Updated last year
• chevrettelab / gator-gc
  ☆21Updated 4 months ago
• medema-group / BiG-SCAPE
  Similarity networks of biosynthetic gene clusters
  ☆139Updated last month
• allie-walker / Natural-product-function
  scripts for predicting natural product activity from biosynthetic gene cluster sequences
  ☆24Updated 2 months ago
• nselem / corason
  Bioinformatic Tools for study Evolution of metabolic diversity
  ☆36Updated last year
• iquasere / UPIMAPI
  UniProt Id Mapping through API
  ☆35Updated last month
• kelwyres / Bactabolize
  ☆41Updated 5 months ago
• IndexThePlanet / Logan
  Logan Unitigs and Contigs
  ☆176Updated 2 months ago
• gamcil / cblaster
  Find clustered hits from a BLAST search
  ☆126Updated this week
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆38Updated 5 months ago
• padlocbio / padloc
  Locate antiviral defence systems in prokaryotic genomes
  ☆64Updated last year
• nebiolabs / domainator
  A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.
  ☆26Updated 2 weeks ago
• kellylab / viral-protein-function-plm
  Viral protein family functional prediction using protein language models
  ☆21Updated last year
• AllTheBacteria / AllTheBacteria
  Follow up to Grace Blackwell's 661k dataset, for 2023
  ☆123Updated 2 months ago
• emmamglass / reconstructor
  This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and…
  ☆23Updated this week
• BioinformaticsLabAtMUN / Promotech
  Machine-learning-based general bacterial promoter prediction tool.
  ☆51Updated 2 years ago
• KatyBrown / CIAlign
  ☆132Updated last year
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆36Updated last month
• EBI-Metagenomics / genomes-catalogue-pipeline
  MGnify genome analysis pipeline
  ☆109Updated this week
• BigDataBiology / macrel
  Predict AMPs in (meta)genomes and peptides
  ☆88Updated 4 months ago