soedinglab / spacedust
Discovery of conserved gene clusters in multiple genomes
☆56Updated 2 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for spacedust
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆21Updated last year
- Phage Annotation using Protein Structures☆87Updated last month
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆30Updated 2 months ago
- Protein structure alignment and search algorithm☆39Updated this week
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated last year
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆37Updated 7 months ago
- ☆35Updated 2 weeks ago
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆42Updated 2 months ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆118Updated last month
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 3 months ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆61Updated last week
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆75Updated 8 months ago
- Pipeline for major biological analyses.☆34Updated 2 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆21Updated 7 months ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆20Updated 2 years ago
- Bacterial Annotation by Learned Representation of Genes☆54Updated 3 years ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆29Updated 2 weeks ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆30Updated 8 months ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆51Updated this week
- Learning and Aligning Large Protein Families (MSA-HMM)☆19Updated this week
- Similarity networks of biosynthetic gene clusters☆73Updated this week
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆25Updated last year
- a python package for automated generation of phylogenetic trees from genbank files☆16Updated 2 weeks ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆52Updated 3 months ago
- Bioinformatics tool for Locus Visualisation☆72Updated 2 weeks ago
- ☆18Updated 2 years ago
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…☆18Updated 4 months ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- ☆25Updated last week
- Detection of incorrectly labeled sequences across kingdoms☆80Updated 2 years ago