soedinglab / spacedust
Discovery of conserved gene clusters in multiple genomes
☆59Updated 2 weeks ago
Alternatives and similar repositories for spacedust:
Users that are interested in spacedust are comparing it to the libraries listed below
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated 2 years ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆45Updated last month
- Universal and efficient core gene phylogeny with Foldseek and ProstT5☆48Updated last week
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆30Updated last week
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆67Updated last month
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆57Updated 2 months ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆32Updated 5 months ago
- Protein structure alignment and search algorithm☆51Updated this week
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆39Updated last month
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆78Updated 3 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆31Updated 11 months ago
- ☆19Updated 2 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆24Updated this week
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 6 months ago
- Viral protein family functional prediction using protein language models☆18Updated 8 months ago
- ☆38Updated 2 months ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆21Updated 2 years ago
- Pipeline for major biological analyses.☆34Updated 2 years ago
- Similarity networks of biosynthetic gene clusters☆97Updated this week
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated last year
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆46Updated 5 months ago
- Phage Annotation using Protein Structures☆96Updated last week
- Bacterial Annotation by Learned Representation of Genes☆54Updated 4 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆32Updated last month
- Software for predicting translation initiation rates in bacteria☆21Updated 3 months ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆21Updated 2 weeks ago
- Learning and Aligning Large Protein Families with support of protein language models.☆20Updated last week
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 2 years ago
- UniProt Id Mapping through API☆31Updated 4 months ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆18Updated this week