ilyavs / exodus
☆11Updated 2 years ago
Alternatives and similar repositories for exodus:
Users that are interested in exodus are comparing it to the libraries listed below
- Hierarchical clustering of cgMLST☆11Updated last year
- Computation of average nucleotide identity with the use of MMseqs2☆13Updated 4 months ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated 10 months ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆20Updated 4 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated last year
- A Hierarchical Approach to Pangenomics Inference☆11Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- Hybrid Assembler for Plasmids☆10Updated 2 years ago
- viralFlye pipeline☆18Updated 8 months ago
- Microbial agile accurate SNP Typer☆29Updated last year
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆14Updated last year
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆19Updated last year
- ☆19Updated 3 years ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆18Updated last year
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Updated 5 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆44Updated this week
- A Swiss-Army-Knife for Bioinformaticians☆12Updated last month
- ☆25Updated last year
- Prophage Activity Estimator☆26Updated 10 months ago
- ☆9Updated 2 years ago
- ☆7Updated 3 years ago
- Population genomics from metagenomes☆11Updated 7 months ago
- ☆31Updated last year
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆24Updated 6 months ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆50Updated 2 weeks ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆33Updated 3 years ago
- ☆15Updated 2 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- Primer design from single genes to whole gene families for unlocking the tree of life☆14Updated last month