michaelkyu / MobMess
☆20Updated 3 years ago
Alternatives and similar repositories for MobMess:
Users that are interested in MobMess are comparing it to the libraries listed below
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆34Updated 3 years ago
- ☆25Updated last year
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆11Updated last month
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆21Updated last week
- Prophage Activity Estimator☆26Updated 11 months ago
- ☆16Updated 4 months ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆24Updated 6 months ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Updated 3 weeks ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆12Updated last year
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Updated last year
- Population genomics from metagenomes☆11Updated 8 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆49Updated 10 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆44Updated last week
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆20Updated 4 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- Hydrocarbon biodegradation gene annotation☆15Updated 2 years ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Updated last year
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆24Updated 2 years ago
- Protocol for finding informative protein families and then using them to score omic samples☆18Updated 2 years ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated 10 months ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 8 months ago
- ☆31Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆23Updated 9 months ago
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆15Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 2 weeks ago
- Unified Human Gut Virome Catalog☆31Updated 9 months ago
- MAGinator - Accurate SNV calling and profiling of MAGs☆22Updated 3 months ago
- ☆13Updated 7 years ago