☆23Feb 7, 2022Updated 4 years ago
Alternatives and similar repositories for MobMess
Users that are interested in MobMess are comparing it to the libraries listed below
Sorting:
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Feb 9, 2022Updated 4 years ago
- This is a repository for CAMPER.☆17Mar 18, 2024Updated 2 years ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆24Feb 7, 2025Updated last year
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆49Oct 12, 2023Updated 2 years ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Feb 12, 2026Updated last month
- Metagenomic search for novel CRISPR-transposons☆12Sep 30, 2021Updated 4 years ago
- Tools to analyze the differences and similarities between CRISPR arrays☆11Dec 17, 2024Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆54Jul 3, 2024Updated last year
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Sep 8, 2025Updated 6 months ago
- ☆25Jun 20, 2023Updated 2 years ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Oct 26, 2021Updated 4 years ago
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆14Jul 30, 2024Updated last year
- ☆45Jun 27, 2023Updated 2 years ago
- a pipeline to cluster proteins into families☆10Apr 1, 2020Updated 5 years ago
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Apr 22, 2024Updated last year
- A taxonomic classifier of plasmids☆28Jul 7, 2021Updated 4 years ago
- Systematic search of all known anti-phage systems.☆146Jan 22, 2026Updated last month
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Feb 12, 2026Updated last month
- MetaCC allows scalable and integrative analyses of both long-read and short-read metagenomic Hi-C data☆12Mar 8, 2025Updated last year
- From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax☆27Feb 8, 2026Updated last month
- Locate antiviral defence systems in prokaryotic genomes☆69Oct 22, 2024Updated last year
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆68Mar 28, 2025Updated 11 months ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆37Feb 26, 2023Updated 3 years ago
- ☆21Mar 15, 2023Updated 3 years ago
- Repository for codes, analyses and visualizations for the CAMI II challenges☆14Sep 4, 2023Updated 2 years ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆67Mar 2, 2022Updated 4 years ago
- ☆19Nov 11, 2024Updated last year
- strain-level analysis tools☆39Oct 21, 2024Updated last year
- Autometa: Automated Extraction of Genomes from Shotgun Metagenomes☆45Jan 24, 2025Updated last year
- PLSDB pipeline to collect bacterial plasmids from NCBI☆39Oct 23, 2024Updated last year
- Predict prokaryotic host for phage metagenomic sequences☆55Sep 17, 2024Updated last year
- Discovery of conserved gene clusters in multiple genomes☆125Jan 16, 2026Updated 2 months ago
- Ready-to-use pipeline to detect, count and identify the hgcAB genes, involved in mercury methylation, from metagenomes☆10May 17, 2024Updated last year
- IS mapping software☆57Dec 3, 2021Updated 4 years ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆86Dec 27, 2024Updated last year
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Aug 2, 2022Updated 3 years ago
- Rapid comparison and dereplication of genomes☆329Nov 10, 2025Updated 4 months ago