Arkadiy-Garber / SprayNPrayLinks
Rapid and simple taxonomic profiling of genome and metagenome contigs
☆29Updated 2 years ago
Alternatives and similar repositories for SprayNPray
Users that are interested in SprayNPray are comparing it to the libraries listed below
Sorting:
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Calculate assocations between genes and traits☆29Updated 9 months ago
- Discover and annotate the virome☆58Updated 2 months ago
- ZGA prokaryotic genome assembly and annotation pipeline☆13Updated last year
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- Bacterial GWAS analysis☆46Updated 2 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 8 months ago
- Microbial agile accurate SNP Typer☆30Updated 2 years ago
- MAG Circularization Method☆32Updated last month
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆41Updated last year
- MAGScoT - a MAG scoring and refinement tool☆41Updated last year
- Automated strain separation of low-complexity metagenomes☆53Updated 4 years ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated last year
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- ☆33Updated 2 years ago
- Prophage Activity Estimator☆29Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 5 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆39Updated 3 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated 3 weeks ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 3 years ago
- A Hierarchical Approach to Pangenomics Inference☆13Updated last year
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- Automatic eukaryotic taxonomic classification☆29Updated 7 months ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago