Arkadiy-Garber / SprayNPrayLinks
Rapid and simple taxonomic profiling of genome and metagenome contigs
☆29Updated 2 years ago
Alternatives and similar repositories for SprayNPray
Users that are interested in SprayNPray are comparing it to the libraries listed below
Sorting:
- Discover and annotate the virome☆53Updated this week
- Calculate assocations between genes and traits☆28Updated 7 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- Bacterial GWAS analysis☆44Updated 2 months ago
- MAG Circularization Method☆32Updated 3 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Automatic eukaryotic taxonomic classification☆28Updated 5 months ago
- Microbial agile accurate SNP Typer☆29Updated last year
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- Automated strain separation of low-complexity metagenomes☆50Updated 3 years ago
- ☆24Updated 8 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 5 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- ZGA prokaryotic genome assembly and annotation pipeline☆13Updated last year
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated last year
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆25Updated 2 months ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 2 years ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 3 years ago
- Recombination-free trees☆60Updated last month
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- MAGScoT - a MAG scoring and refinement tool☆37Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated last week
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated last year
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Updated 9 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆41Updated 2 years ago
- A workflow and scripts for large-scale antiSMASH analyses☆42Updated 6 months ago
- A taxonomic classifier of plasmids☆28Updated 4 years ago