Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!
☆46Jun 1, 2026Updated 3 months ago
Alternatives and similar repositories for sphae
Users that are interested in sphae are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pharokka is a rapid standardised annotation tool for bacteriophage genomes and metagenomes.☆231Updated this week
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆86Sep 7, 2026Updated last week
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆18Nov 29, 2023Updated 2 years ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆61Jun 4, 2025Updated last year
- Reorients assembled microbial sequences☆146Jun 30, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆37Dec 6, 2023Updated 2 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆90Sep 9, 2026Updated last week
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆77Aug 13, 2026Updated last month
- Phage Annotation using Protein Structures☆175Updated this week
- Rapid & standardized genome annotation using protein structural information☆77Updated this week
- Plasmid analysis using rearrangement distances☆56Jul 19, 2026Updated last month
- A hybrid assembly and MAG recovery pipeline (and more!)☆119Sep 9, 2026Updated last week
- 🛠️🧬 A Software Framework to Manipulate Assembly Graphs☆21Aug 8, 2026Updated last month
- GraphSNP: Using graph approach to investigate outbreak cluster and transmission in a web browser☆13Oct 5, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated 2 years ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆13Jan 23, 2026Updated 7 months ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated 8 months ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆92Mar 12, 2026Updated 6 months ago
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆25Apr 30, 2026Updated 4 months ago
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆22Aug 17, 2026Updated last month
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆61Sep 23, 2025Updated 11 months ago
- Assembling phage particles one protein at a time☆26Aug 3, 2026Updated last month
- Prediction of prophages from bacterial genomes☆88May 1, 2026Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆25Nov 25, 2025Updated 9 months ago
- Code used to analyse and plot metadata of metagenomic binning tools☆14Aug 22, 2024Updated 2 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆18Mar 3, 2026Updated 6 months ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆83Apr 16, 2025Updated last year
- Fast pairwise transmission inference from single genome and/or metagenomic data☆39Aug 21, 2026Updated 3 weeks ago
- SemiBin: metagenomics binning with self-supervised deep learning☆175Updated this week
- viralVerify: viral contig verification tool☆77Feb 19, 2026Updated 7 months ago
- Bifrost graph gene caller.☆101Aug 31, 2026Updated 2 weeks ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆195Sep 8, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ⚡🦠🧬📇 Rapid microbial genomes-to-report pipeline☆76Updated this week
- A comprehensive prokaryotic genome annotation pipeline☆93Sep 4, 2026Updated 2 weeks ago
- Systematic search of all known anti-phage systems.☆186Sep 1, 2026Updated 2 weeks ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆231May 9, 2026Updated 4 months ago
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Oct 24, 2025Updated 10 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆321Updated this week
- ☆18Jun 5, 2026Updated 3 months ago