linsalrob / sphaeLinks
Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!
☆39Updated 2 months ago
Alternatives and similar repositories for sphae
Users that are interested in sphae are comparing it to the libraries listed below
Sorting:
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆35Updated 7 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆51Updated last year
- ☆38Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 3 months ago
- Prophage Activity Estimator☆28Updated last year
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- ☆26Updated 2 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 6 months ago
- Bacterial GWAS analysis☆46Updated 3 weeks ago
- whole genome MLST analysis☆49Updated 5 months ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆35Updated 3 weeks ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆67Updated this week
- ☆33Updated last year
- ☆20Updated last year
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Updated 11 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Discover and annotate the virome☆53Updated last month
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆23Updated 2 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆39Updated 3 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆24Updated 2 weeks ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆25Updated this week
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆67Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆31Updated last month
- Calculate assocations between genes and traits☆29Updated 8 months ago
- A python library for predicting phage lifestyle based on genome sequence☆37Updated 2 years ago