linsalrob / sphae
Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!
☆28Updated 2 weeks ago
Alternatives and similar repositories for sphae:
Users that are interested in sphae are comparing it to the libraries listed below
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆24Updated 2 months ago
- ☆37Updated last year
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Updated 3 weeks ago
- MAGScoT - a MAG scoring and refinement tool☆31Updated 3 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆31Updated 2 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…☆41Updated 3 weeks ago
- ☆25Updated last year
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆18Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆22Updated 5 months ago
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆25Updated 2 months ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆25Updated 2 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆34Updated last month
- Downstream processing of VAMB binning for Viral Elucidation☆47Updated 6 months ago
- Prophage Activity Estimator☆26Updated 7 months ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- Calculate assocations between genes and traits☆20Updated 2 months ago
- Bacterial GWAS analysis☆34Updated last month
- Fast pairwise transmission inference from single genome and/or metagenomic data☆19Updated 3 months ago
- ☆31Updated last year
- ☆18Updated 4 months ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆17Updated last year
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆18Updated 9 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆37Updated 3 months ago
- Pipeline for metagenome and metatranscriptome joint assembly☆19Updated last year
- Discover and annotate the virome☆35Updated 3 months ago
- Gene Absence Presence Identification tool.☆26Updated last year
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆21Updated last year
- ☆18Updated 2 years ago