linsalrob / sphaeLinks
Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!
☆34Updated last month
Alternatives and similar repositories for sphae
Users that are interested in sphae are comparing it to the libraries listed below
Sorting:
- Downstream processing of VAMB binning for Viral Elucidation☆51Updated last year
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆31Updated 4 months ago
- ☆37Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆48Updated last week
- Calculate assocations between genes and traits☆25Updated 4 months ago
- ☆26Updated 2 years ago
- ☆34Updated last year
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Updated 3 months ago
- Unified Human Gut Virome Catalog☆32Updated last year
- Prophage Activity Estimator☆26Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆37Updated 3 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆61Updated last week
- Bacterial GWAS analysis☆43Updated 2 weeks ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆43Updated last week
- plasmidVerify: plasmid contig verification tool☆13Updated 5 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 7 months ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆18Updated last year
- A python library for predicting phage lifestyle based on genome sequence☆38Updated 2 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- Phage-Host Interaction Search Tool☆27Updated last year
- Fast pairwise transmission inference from single genome and/or metagenomic data☆21Updated last week
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Updated last week
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆20Updated 7 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆59Updated 3 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated 9 months ago
- Discover and annotate the virome☆45Updated 3 weeks ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆24Updated 2 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- A taxonomic classifier of plasmids☆27Updated 4 years ago