linsalrob / sphae
Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!
☆32Updated last month
Alternatives and similar repositories for sphae
Users that are interested in sphae are comparing it to the libraries listed below
Sorting:
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆26Updated last month
- ☆37Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated 3 weeks ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 4 months ago
- ☆25Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- Prophage Activity Estimator☆26Updated 11 months ago
- plasmidVerify: plasmid contig verification tool☆13Updated 5 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆18Updated 2 years ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆21Updated 7 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆34Updated 3 years ago
- Plasmid analysis using rearrangement distances☆42Updated 6 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- Unified Human Gut Virome Catalog☆31Updated 9 months ago
- Calculate assocations between genes and traits☆23Updated 2 months ago
- ☆20Updated 8 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 2 weeks ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆30Updated 2 weeks ago
- Discover and annotate the virome☆42Updated last month
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Updated last month
- Downstream processing of VAMB binning for Viral Elucidation☆49Updated 10 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 6 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated last year
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 9 months ago
- MAG Circularization Method☆33Updated 2 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- ☆19Updated 3 months ago
- MAGScoT - a MAG scoring and refinement tool☆35Updated 7 months ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated this week