linsalrob / sphae
Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!
☆32Updated this week
Alternatives and similar repositories for sphae:
Users that are interested in sphae are comparing it to the libraries listed below
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆25Updated 2 weeks ago
- ☆37Updated last year
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 3 months ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated 5 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆44Updated 2 weeks ago
- ☆25Updated last year
- Prophage Activity Estimator☆26Updated 9 months ago
- Calculate assocations between genes and traits☆23Updated 2 weeks ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆18Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- MAGScoT - a MAG scoring and refinement tool☆32Updated 5 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆33Updated 3 years ago
- Bacterial GWAS analysis☆37Updated 2 weeks ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- Unified Human Gut Virome Catalog☆27Updated 8 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆23Updated 8 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 5 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated last year
- Gene Absence Presence Identification tool.☆26Updated last year
- MAG Circularization Method☆33Updated 2 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆33Updated last month
- Discover and annotate the virome☆39Updated 5 months ago
- ☆31Updated last year
- A simple program to classify the lifestyle of phages.☆17Updated last year
- ☆20Updated 6 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆38Updated 5 months ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆23Updated last month
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆19Updated last year
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆20Updated last year
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆48Updated 2 years ago