Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!
β46Jun 1, 2026Updated 2 months ago
Alternatives and similar repositories for sphae
Users that are interested in sphae are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pharokka is a rapid standardised annotation tool for bacteriophage genomes and metagenomes.β222Updated this week
- π«§π§¬ From fragmented assemblies to high-quality bacteriophage genomesβ84Updated this week
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databasβ¦β18Nov 29, 2023Updated 2 years ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Syntenyβ61Jun 4, 2025Updated last year
- Reorients assembled microbial sequencesβ143Jun 30, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- β37Dec 6, 2023Updated 2 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolatesβ89Jul 7, 2026Updated last month
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomesβ76Dec 1, 2025Updated 8 months ago
- Phage Annotation using Protein Structuresβ170Jul 20, 2026Updated 3 weeks ago
- Rapid & standardized genome annotation using protein structural informationβ72Jul 2, 2026Updated last month
- Plasmid analysis using rearrangement distancesβ56Jul 19, 2026Updated 3 weeks ago
- A hybrid assembly and MAG recovery pipeline (and more!)β116Updated this week
- π οΈπ§¬ A Software Framework to Manipulate Assembly Graphsβ21Updated this week
- GraphSNP: Using graph approach to investigate outbreak cluster and transmission in a web browserβ13Oct 5, 2025Updated 10 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits β’ AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Downstream processing of VAMB binning for Viral Elucidationβ55Jul 3, 2024Updated 2 years ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomesβ13Jan 23, 2026Updated 6 months ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to theβ¦β13Jan 19, 2026Updated 6 months ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5β91Mar 12, 2026Updated 4 months ago
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasetsβ25Apr 30, 2026Updated 3 months ago
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMERβ21Jul 22, 2026Updated 2 weeks ago
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence dataβ61Sep 23, 2025Updated 10 months ago
- Assembling phage particles one protein at a timeβ26Aug 3, 2026Updated last week
- Prediction of prophages from bacterial genomesβ86May 1, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.β23Nov 25, 2025Updated 8 months ago
- Code used to analyse and plot metadata of metagenomic binning toolsβ14Aug 22, 2024Updated last year
- Robust individual and aggregate checksums for nucleotide sequencesβ18Mar 3, 2026Updated 5 months ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.β83Apr 16, 2025Updated last year
- Fast pairwise transmission inference from single genome and/or metagenomic dataβ37Updated this week
- SemiBin: metagenomics binning with self-supervised deep learningβ174Updated this week
- viralVerify: viral contig verification toolβ76Feb 19, 2026Updated 5 months ago
- Bifrost graph gene caller.β99Jun 18, 2026Updated last month
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomesβ194Updated this week
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Systematic search of all known anti-phage systems.β184May 5, 2026Updated 3 months ago
- π¦ π§¬π§βπ»π Microbial genomes-to-report pipelineβ75Mar 14, 2026Updated 4 months ago
- A comprehensive prokaryotic genome annotation pipelineβ91Jul 30, 2026Updated last week
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.β227May 9, 2026Updated 3 months ago
- β―οΈπ§¬ Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphsβ37Oct 24, 2025Updated 9 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.β315Feb 3, 2026Updated 6 months ago
- geNomad: Identification of mobile genetic elementsβ328Mar 29, 2026Updated 4 months ago