☆63Feb 27, 2024Updated 2 years ago
Alternatives and similar repositories for MetaBinner
Users that are interested in MetaBinner are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆70Mar 10, 2024Updated 2 years ago
- An algorithm for clustering metagenomic sequences.☆41Dec 12, 2025Updated 3 months ago
- AMBER: Assessment of Metagenome BinnERs☆33Mar 10, 2026Updated 2 weeks ago
- Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequenc…☆128Feb 8, 2026Updated last month
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Mar 14, 2024Updated 2 years ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆179Mar 17, 2026Updated last week
- Variational autoencoder for metagenomic binning☆319Feb 23, 2026Updated last month
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Sep 26, 2024Updated last year
- Read alignment statistics for metagenomics☆392Mar 16, 2026Updated last week
- SemiBin: metagenomics binning with self-supervised deep learning☆156Feb 19, 2026Updated last month
- Bioinformatics program inStrain☆182Mar 12, 2026Updated last week
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Oct 24, 2025Updated 5 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆298Feb 3, 2026Updated last month
- Assessing and Improving the quality of metagenomic assemblies☆31Feb 21, 2022Updated 4 years ago
- Improvement of metagenome-assembled genomes☆55Mar 17, 2020Updated 6 years ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆49Oct 12, 2023Updated 2 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆21Mar 25, 2022Updated 3 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆252Mar 20, 2025Updated last year
- MAGScoT - a MAG scoring and refinement tool☆43Oct 10, 2024Updated last year
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆404Mar 2, 2026Updated 3 weeks ago
- More scalable dereplication for metagenome assembled genomes☆78Mar 8, 2026Updated 2 weeks ago
- DAS Tool☆169May 2, 2024Updated last year
- Graph-based assembly phasing☆91Nov 25, 2025Updated 3 months ago
- ☆25Jun 20, 2023Updated 2 years ago
- Estimate metagenomic coverage and sequence diversity☆59Dec 18, 2025Updated 3 months ago
- Set of utilities on sequences and BAM files☆27Oct 27, 2021Updated 4 years ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆587Feb 21, 2026Updated last month
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆467Jul 28, 2023Updated 2 years ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆104Jan 27, 2026Updated last month
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆323Mar 18, 2026Updated last week
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Dec 1, 2025Updated 3 months ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Sep 8, 2025Updated 6 months ago
- Binning Virus Genomes from Metagenomes☆72Jul 13, 2022Updated 3 years ago
- ☆33Feb 10, 2025Updated last year
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆48Apr 14, 2020Updated 5 years ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆220Jan 27, 2025Updated last year
- customizable pipeline to identify viral sequences from (meta)genomic data☆283Nov 28, 2024Updated last year
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆45Feb 5, 2026Updated last month
- Metagenomic Binning Algorithm☆51Jan 16, 2026Updated 2 months ago