ziyewang / MetaBinnerLinks
☆63Updated last year
Alternatives and similar repositories for MetaBinner
Users that are interested in MetaBinner are comparing it to the libraries listed below
Sorting:
- ☆66Updated last year
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Updated 5 months ago
- Horizontal gene transfer (HGT) identification pipeline☆67Updated 2 years ago
- Binning Virus Genomes from Metagenomes☆70Updated 3 years ago
- An algorithm for clustering metagenomic sequences.☆41Updated 2 months ago
- ☆56Updated last week
- GTDB taxonomy taxdump files with trackable TaxIds☆57Updated 9 months ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆87Updated last year
- code repo for mobileOG-db☆46Updated 3 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆46Updated last week
- Taxonomic classification of viruses at Order and Family level☆21Updated 2 years ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆52Updated 4 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 6 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆36Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆54Updated last year
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆49Updated 2 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆84Updated 2 weeks ago
- Prediction of prophages from bacterial genomes☆81Updated last week
- ☆20Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆23Updated 8 months ago
- Unified Human Gut Virome Catalog☆41Updated 3 months ago
- ☆32Updated last year
- A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning☆26Updated 2 years ago
- Prophage Activity Estimator☆31Updated last year
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆28Updated 9 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆68Updated 4 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago