ziyewang / MetaBinnerLinks
☆56Updated last year
Alternatives and similar repositories for MetaBinner
Users that are interested in MetaBinner are comparing it to the libraries listed below
Sorting:
- ☆55Updated last year
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- An algorithm for clustering metagenomic sequences.☆37Updated 4 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆43Updated last week
- Tool to estimate genome quality of microbial eukaryotes☆38Updated last week
- Horizontal gene transfer (HGT) identification pipeline☆61Updated 2 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- Binning Virus Genomes from Metagenomes☆66Updated 3 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆73Updated last month
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆26Updated 3 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆51Updated last year
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 3 months ago
- ☆52Updated last month
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- Prediction of prophages from bacterial genomes☆79Updated last month
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆45Updated 2 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆59Updated 3 months ago
- ☆34Updated last year
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆75Updated 7 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆37Updated 3 years ago
- Taxonomic classification of viruses at Order and Family level☆20Updated 2 years ago
- A pipeline for nanopore long-read metagenomic analysis.☆43Updated 2 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆84Updated 3 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆72Updated last month
- KEGG Module Evaluation Tool☆30Updated last year
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago