ziyewang / MetaBinnerLinks
☆54Updated last year
Alternatives and similar repositories for MetaBinner
Users that are interested in MetaBinner are comparing it to the libraries listed below
Sorting:
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated 11 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆41Updated 7 months ago
- ☆53Updated last year
- Improvement of metagenome-assembled genomes☆52Updated 5 years ago
- An algorithm for clustering metagenomic sequences.☆37Updated 2 months ago
- ☆50Updated last year
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆26Updated last month
- Altered version of PathoFact to work more conveniently with SLURM and large input files☆12Updated 7 months ago
- Binning Virus Genomes from Metagenomes☆63Updated 2 years ago
- Taxonomic classification of viruses at Order and Family level☆20Updated 2 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆58Updated last month
- KEGG Module Evaluation Tool☆29Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Discover and annotate the virome☆42Updated last month
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆42Updated 2 years ago
- code repo for mobileOG-db☆37Updated last week
- Tool to estimate genome quality of microbial eukaryotes☆37Updated 4 months ago
- ☆20Updated 9 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆30Updated 2 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- GTDB taxonomy taxdump files with trackable TaxIds☆53Updated last month
- IslandPath standalone software☆32Updated last year
- ☆32Updated 3 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆34Updated 3 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆65Updated 2 weeks ago
- ☆24Updated 6 years ago
- A pipeline for nanopore long-read metagenomic analysis.☆37Updated last week
- ☆28Updated 3 months ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- ☆27Updated last year