ziyewang / MetaBinnerLinks
☆56Updated last year
Alternatives and similar repositories for MetaBinner
Users that are interested in MetaBinner are comparing it to the libraries listed below
Sorting:
- ☆55Updated last year
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- An algorithm for clustering metagenomic sequences.☆37Updated 3 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆42Updated last week
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆72Updated 3 weeks ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆32Updated 2 years ago
- ☆52Updated 2 weeks ago
- Horizontal gene transfer (HGT) identification pipeline☆61Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 2 months ago
- Binning Virus Genomes from Metagenomes☆65Updated 3 years ago
- Taxonomic classification of viruses at Order and Family level☆20Updated 2 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- A toolkit for prokaryotic comparative genomics☆49Updated 5 months ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆59Updated 3 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆37Updated 3 years ago
- KEGG Module Evaluation Tool☆30Updated last year
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆26Updated 2 months ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆74Updated 6 months ago
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 5 months ago
- ☆20Updated 10 months ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- whole genome MLST analysis☆45Updated last month
- code repo for mobileOG-db☆39Updated last month
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆70Updated 3 weeks ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆42Updated 2 years ago
- Prophage Activity Estimator☆26Updated last year
- ☆27Updated last year
- ☆32Updated last year