ziyewang / MetaBinner
☆53Updated last year
Alternatives and similar repositories for MetaBinner:
Users that are interested in MetaBinner are comparing it to the libraries listed below
- EzAAI - High Throughput Prokaryotic AAI Calculator☆40Updated 6 months ago
- Improvement of metagenome-assembled genomes☆52Updated 5 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆49Updated 10 months ago
- ☆52Updated last year
- code repo for mobileOG-db☆35Updated 3 months ago
- Taxonomic classification of viruses at Order and Family level☆20Updated 2 years ago
- ☆50Updated last year
- Altered version of PathoFact to work more conveniently with SLURM and large input files☆12Updated 5 months ago
- Binning Virus Genomes from Metagenomes☆62Updated 2 years ago
- An algorithm for clustering metagenomic sequences.☆36Updated last month
- GTDB taxonomy taxdump files with trackable TaxIds☆53Updated last week
- KEGG Module Evaluation Tool☆29Updated last year
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆34Updated 3 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆57Updated 2 weeks ago
- A pipeline for nanopore long-read metagenomic analysis.☆35Updated last week
- Discover and annotate the virome☆41Updated 3 weeks ago
- IslandPath standalone software☆32Updated last year
- Prophage Activity Estimator☆26Updated 11 months ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆46Updated 3 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated this week
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated last week
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- ☆30Updated 2 months ago
- Horizontal gene transfer (HGT) identification pipeline☆57Updated last year
- ☆35Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆43Updated 2 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆45Updated 5 years ago