ziyewang / MetaBinner
☆51Updated last year
Alternatives and similar repositories for MetaBinner:
Users that are interested in MetaBinner are comparing it to the libraries listed below
- Downstream processing of VAMB binning for Viral Elucidation☆48Updated 8 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆38Updated 5 months ago
- Local version of the virus identification and analysis web server (tool set)☆44Updated last week
- ☆49Updated 11 months ago
- ☆48Updated last year
- An algorithm for clustering metagenomic sequences.☆34Updated 3 weeks ago
- Improvement of metagenome-assembled genomes☆50Updated 5 years ago
- Taxonomic classification of viruses at Order and Family level☆20Updated 2 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆52Updated 10 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆19Updated 11 months ago
- ☆29Updated last month
- KEGG Module Evaluation Tool☆29Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- Binning Virus Genomes from Metagenomes☆61Updated 2 years ago
- Horizontal gene transfer (HGT) identification pipeline☆57Updated last year
- ☆26Updated last month
- Altered version of PathoFact to work more conveniently with SLURM and large input files☆12Updated 4 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆58Updated 2 weeks ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆55Updated 2 weeks ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated 11 months ago
- Tool to estimate genome quality of microbial eukaryotes☆36Updated last month
- Discover and annotate the virome☆39Updated 5 months ago
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆23Updated 4 months ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆65Updated 7 months ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆32Updated 3 years ago
- ☆35Updated last year
- Unified Human Gut Virome Catalog☆27Updated 8 months ago