MattiaPandolfoVR / MetaPhageLinks
☆38Updated 2 years ago
Alternatives and similar repositories for MetaPhage
Users that are interested in MetaPhage are comparing it to the libraries listed below
Sorting:
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆35Updated 9 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆52Updated last year
- Prophage Activity Estimator☆29Updated last year
- A python library for predicting phage lifestyle based on genome sequence☆37Updated 2 years ago
- Unified Human Gut Virome Catalog☆39Updated last month
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Updated last year
- ☆33Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆70Updated this week
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆39Updated 2 weeks ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 3 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆45Updated 4 months ago
- Discover and annotate the virome☆56Updated 2 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 8 months ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Updated last year
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆25Updated 2 weeks ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆68Updated this week
- Calculate assocations between genes and traits☆29Updated 9 months ago
- A simple program to classify the lifestyle of phages.☆17Updated 2 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- Classify metagenomic contigs as eukaryotic or prokaryotic☆43Updated 2 years ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆39Updated last year
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆82Updated 2 weeks ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- ☆26Updated 2 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- MAGScoT - a MAG scoring and refinement tool☆41Updated last year
- Phage-Host Interaction Search Tool☆29Updated last year
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆24Updated last year