MattiaPandolfoVR / MetaPhageLinks
☆38Updated 2 years ago
Alternatives and similar repositories for MetaPhage
Users that are interested in MetaPhage are comparing it to the libraries listed below
Sorting:
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆35Updated 9 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆52Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆45Updated 4 months ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆39Updated 2 weeks ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 3 years ago
- Prophage Activity Estimator☆29Updated last year
- A python library for predicting phage lifestyle based on genome sequence☆37Updated 2 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Updated last year
- Unified Human Gut Virome Catalog☆39Updated last month
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 8 months ago
- ☆33Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆70Updated this week
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆50Updated 3 years ago
- Discover and annotate the virome☆56Updated 2 months ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆25Updated 2 weeks ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆39Updated 3 months ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆68Updated this week
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- Bacterial GWAS analysis☆46Updated 2 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆82Updated 2 weeks ago
- ☆26Updated 2 years ago
- Phage-Host Interaction Search Tool☆29Updated last year
- Comparisons of multiple different prophage predictions☆26Updated 3 years ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Updated last year
- A simple program to classify the lifestyle of phages.☆17Updated 2 years ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆39Updated last year
- A toolkit for prokaryotic comparative genomics☆51Updated 2 months ago
- Calculate assocations between genes and traits☆29Updated 9 months ago