MattiaPandolfoVR / MetaPhageLinks
☆38Updated last year
Alternatives and similar repositories for MetaPhage
Users that are interested in MetaPhage are comparing it to the libraries listed below
Sorting:
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆34Updated 7 months ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Updated 10 months ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆39Updated 2 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- Unified Human Gut Virome Catalog☆37Updated last week
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆64Updated 2 weeks ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆39Updated 3 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 3 months ago
- A python library for predicting phage lifestyle based on genome sequence☆37Updated 2 years ago
- Prophage Activity Estimator☆28Updated last year
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆25Updated 3 weeks ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆52Updated this week
- Bacterial GWAS analysis☆46Updated 3 weeks ago
- ☆33Updated last year
- ☆26Updated 2 years ago
- Discover and annotate the virome☆53Updated last month
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆35Updated 3 weeks ago
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 7 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- A simple program to classify the lifestyle of phages.☆17Updated 2 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆41Updated 2 years ago
- Calculate assocations between genes and traits☆29Updated 8 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆31Updated last month
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Updated 11 months ago
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆50Updated 3 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆55Updated 5 months ago
- ☆16Updated 6 months ago
- Comparisons of multiple different prophage predictions☆26Updated 3 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated last month