soedinglab / WIsH
Predict prokaryotic host for phage metagenomic sequences
☆52Updated 7 months ago
Alternatives and similar repositories for WIsH
Users that are interested in WIsH are comparing it to the libraries listed below
Sorting:
- ☆31Updated 2 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆49Updated 10 months ago
- Unified Human Gut Virome Catalog☆31Updated 9 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆40Updated 6 months ago
- VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison☆30Updated 6 years ago
- Prophage Activity Estimator☆26Updated 11 months ago
- A python library for predicting phage lifestyle based on genome sequence☆37Updated last year
- GTDB taxonomy taxdump files with trackable TaxIds☆53Updated 2 weeks ago
- PHANOTATE: a gene caller for phages.☆74Updated 5 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 2 weeks ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- A simple program to classify the lifestyle of phages.☆17Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- Improvement of metagenome-assembled genomes☆52Updated 5 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 3 weeks ago
- ☆32Updated last year
- Binning Virus Genomes from Metagenomes☆62Updated 2 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- A toolkit for prokaryotic comparative genomics☆48Updated 3 months ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆47Updated 3 months ago
- Bifrost graph gene caller.☆93Updated 7 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated last year
- IslandPath standalone software☆32Updated last year
- ☆26Updated last year
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆20Updated 4 years ago
- Tool to estimate genome quality of microbial eukaryotes☆37Updated 3 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆62Updated 3 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- Taxonomic classification of viruses at Order and Family level☆20Updated 2 years ago