soedinglab / WIsH
Predict prokaryotic host for phage metagenomic sequences
☆52Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for WIsH
- Downstream processing of VAMB binning for Viral Elucidation☆46Updated 4 months ago
- Prophage Activity Estimator☆26Updated 5 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆36Updated last month
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- A simple program to classify the lifestyle of phages.☆16Updated last year
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆39Updated 3 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated 7 months ago
- PHANOTATE: a tool to annotate phage genomes.☆69Updated last month
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆27Updated 10 months ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆25Updated last week
- Comparisons of multiple different prophage predictions☆24Updated 2 years ago
- ☆23Updated 9 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆28Updated last year
- ☆30Updated 11 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆18Updated 7 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆49Updated this week
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 3 years ago
- ☆24Updated 5 years ago
- Binning Virus Genomes from Metagenomes☆58Updated 2 years ago
- ☆43Updated last year
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆35Updated 2 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆25Updated last week
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆67Updated 2 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆30Updated 2 weeks ago
- IslandPath standalone software☆31Updated last year
- ☆25Updated 7 months ago
- Phage prediction tools☆15Updated last year
- Estimate metagenomic coverage and sequence diversity☆46Updated 3 months ago
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆16Updated 5 months ago