Alternatives and similar repositories for WIsH:

Users that are interested in WIsH are comparing it to the libraries listed below

• RasmussenLab / phamb
  Downstream processing of VAMB binning for Viral Elucidation
  ☆48Updated 8 months ago
• adamhockenberry / bacphlip
  A python library for predicting phage lifestyle based on genome sequence
  ☆36Updated last year
• XiaofangJ / PhaseFinder
  A pipeline to computationally identify invertible DNA regions and quantify their orientations.
  ☆29Updated last year
• snayfach / UHGV
  Unified Human Gut Virome Catalog
  ☆27Updated 8 months ago
• Shamir-Lab / SCAPP
  SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…
  ☆31Updated 2 years ago
• deprekate / PHACTS
  A simple program to classify the lifestyle of phages.
  ☆17Updated last year
• AnantharamanLab / PropagAtE
  Prophage Activity Estimator
  ☆26Updated 9 months ago
• xinehc / melon
  Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
  ☆33Updated last month
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆38Updated 5 months ago
• jessieren / VirHostMatcher
  VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison
  ☆30Updated 6 years ago
• Yasas1994 / Jaeger
  Jaeger is a quick and precise tool for detecting phages in sequence assemblies.
  ☆26Updated 2 weeks ago
• apcamargo / ictv-mmseqs2-protein-database
  ☆29Updated last month
• michaelkyu / PlasX
  PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
  ☆33Updated 3 years ago
• HIT-ImmunologyLab / DBSCAN-SWA
  ☆31Updated last year
• aldertzomer / RFPlasmid
  Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf
  ☆48Updated 11 months ago
• deprekate / PHANOTATE
  PHANOTATE: a tool to annotate phage genomes.
  ☆72Updated 3 months ago
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆58Updated last month
• AnantharamanLab / vRhyme
  Binning Virus Genomes from Metagenomes
  ☆61Updated 2 years ago
• HubertTang / PLASMe
  ☆26Updated 11 months ago
• Kalan-Lab / lsaBGC
  lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
  ☆37Updated this week
• gatech-genemark / MetaGeneMark-2
  MetaGeneMark-2: Improved Gene Prediction in Metagenomes
  ☆19Updated last year
• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆50Updated 5 years ago
• xthua / bacant
  This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.
  ☆20Updated last year
• tseemann / phastaf
  Identify phage regions in bacterial genomes for masking purposes
  ☆30Updated 5 years ago
• mtisza1 / Cenote-Taker3
  Discover and annotate the virome
  ☆39Updated 5 months ago
• feargalr / Demovir
  Taxonomic classification of viruses at Order and Family level
  ☆20Updated 2 years ago
• zreitz / multismash
  A workflow and scripts for large-scale antiSMASH analyses
  ☆37Updated 3 months ago
• brinkmanlab / islandpath
  IslandPath standalone software
  ☆31Updated last year
• KIT-IBG-5 / mdmcleaner
  MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs
  ☆24Updated 2 years ago
• raufs / skDER
  skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.
  ☆44Updated 3 weeks ago