Alternatives and similar repositories for WIsH:

Users that are interested in WIsH are comparing it to the libraries listed below

• RasmussenLab / phamb
  Downstream processing of VAMB binning for Viral Elucidation
  ☆47Updated 6 months ago
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆37Updated 3 months ago
• adamhockenberry / bacphlip
  A python library for predicting phage lifestyle based on genome sequence
  ☆35Updated last year
• jessieren / VirHostMatcher
  VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison
  ☆29Updated 6 years ago
• AnantharamanLab / PropagAtE
  Prophage Activity Estimator
  ☆26Updated 7 months ago
• XiaofangJ / PhaseFinder
  A pipeline to computationally identify invertible DNA regions and quantify their orientations.
  ☆28Updated last year
• apcamargo / ictv-mmseqs2-protein-database
  ☆25Updated 11 months ago
• Shamir-Lab / SCAPP
  SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…
  ☆31Updated last year
• AnantharamanLab / vRhyme
  Binning Virus Genomes from Metagenomes
  ☆59Updated 2 years ago
• michaelkyu / PlasX
  PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
  ☆31Updated 2 years ago
• cultivarium / MicrobeMod
  A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing
  ☆44Updated last month
• gatech-genemark / MetaGeneMark-2
  MetaGeneMark-2: Improved Gene Prediction in Metagenomes
  ☆18Updated 9 months ago
• kelwyres / Bactabolize
  ☆37Updated last month
• deprekate / PHACTS
  A simple program to classify the lifestyle of phages.
  ☆16Updated last year
• HIT-ImmunologyLab / DBSCAN-SWA
  ☆31Updated last year
• deprekate / PHANOTATE
  PHANOTATE: a tool to annotate phage genomes.
  ☆71Updated last month
• feargalr / Demovir
  Taxonomic classification of viruses at Order and Family level
  ☆19Updated last year
• Yasas1994 / Jaeger
  Jaeger is a quick and precise tool for detecting phages in sequence assemblies.
  ☆25Updated 2 months ago
• bhattlab / lathe
  A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing
  ☆69Updated 3 years ago
• cai91 / GPD
  This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"
  ☆20Updated 3 years ago
• susiegriggo / Phynteny
  Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny
  ☆43Updated last month
• tseemann / phastaf
  Identify phage regions in bacterial genomes for masking purposes
  ☆30Updated 5 years ago
• ziyewang / MetaBinner
  ☆48Updated 10 months ago
• brinkmanlab / islandpath
  IslandPath standalone software
  ☆31Updated last year
• HubertTang / PLASMe
  ☆26Updated 9 months ago
• rrwick / Assembly-Dereplicator
  A tool for removing redundant genomes from a set of assemblies
  ☆70Updated last year
• raw-lab / MetaCerberus
  Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…
  ☆53Updated 3 weeks ago
• SWittouck / SCARAP
  A toolkit for prokaryotic comparative genomics
  ☆38Updated 2 months ago
• patrickwest / EukRep_Pipeline
  ☆24Updated 6 years ago
• donovan-h-parks / RefineM
  A toolbox for improving metagenome-assembled genomes.
  ☆63Updated 3 years ago