Fast implementation of KofamScan optimized for high-memory systems using PyHMMER
☆18Jan 13, 2026Updated 3 months ago
Alternatives and similar repositories for pykofamsearch
Users that are interested in pykofamsearch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆23Nov 25, 2025Updated 5 months ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated 3 months ago
- Python library for identification and masking of low-complexity regions in nucleotide sequences☆13Mar 27, 2026Updated last month
- ☆10Jun 9, 2025Updated 10 months ago
- Just another minhash implementation.☆12Apr 28, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆21Dec 12, 2024Updated last year
- ☆12Apr 5, 2022Updated 4 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Mar 9, 2026Updated 2 months ago
- GEne Cluster prediction with COnditional random fields.☆84Mar 10, 2026Updated last month
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆42Updated this week
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆50Oct 12, 2023Updated 2 years ago
- Pipeline to apply encoded Kmer analysis to protein sequences☆16Apr 3, 2026Updated last month
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆23Mar 20, 2026Updated last month
- MetaSNV, a metagenomic SNV calling pipeline.☆21Mar 25, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Predict AMPs in (meta)genomes and peptides☆90Nov 24, 2025Updated 5 months ago
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated 7 months ago
- RNA dependent RNA Polymerase Palmprint Analysis☆12Aug 1, 2024Updated last year
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆44Sep 3, 2024Updated last year
- Ready-made Taxonomic Weights Repository☆26Mar 31, 2022Updated 4 years ago
- Metabolic scanning and annotation of Metagenomes☆10Dec 18, 2025Updated 4 months ago
- microbial association network clustering algorithm☆14Dec 14, 2023Updated 2 years ago
- ☆13Apr 22, 2026Updated 2 weeks ago
- Searching large collections of sequencing data with genome-scale queries☆17Feb 5, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Genomewide Epistasis Analysis on Bacteria☆15May 13, 2025Updated 11 months ago
- Plasmid analysis using rearrangement distances☆53Apr 30, 2026Updated last week
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆54Apr 23, 2026Updated 2 weeks ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆301Feb 3, 2026Updated 3 months ago
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Mar 25, 2026Updated last month
- BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data.☆12Sep 7, 2022Updated 3 years ago
- R package for searching, downloading and analysis of EBI MGnify metagenomics data☆23Feb 13, 2026Updated 2 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆249Oct 12, 2025Updated 6 months ago
- Tools for analyzing trees☆13Apr 16, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Bifrost graph gene caller.☆98Apr 12, 2026Updated 3 weeks ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆20Jan 22, 2026Updated 3 months ago
- Feature Aggregate Depth Utility☆12Aug 20, 2024Updated last year
- Follow up to Grace Blackwell's 661k dataset, for 2023☆139Apr 10, 2026Updated 3 weeks ago
- snpless-nf - A Nextflow pipeline for time-course analysis with bacterial NGS whole-genome data.☆14May 12, 2024Updated last year
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 8 months ago
- Visualize microbial evolution at the SNP level!☆15Aug 12, 2025Updated 8 months ago